View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15376_high_14 (Length: 410)

Name: NF15376_high_14
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15376_high_14
NF15376_high_14
[»] chr1 (6 HSPs)
chr1 (243-397)||(8100208-8100362)
chr1 (59-178)||(8100576-8100695)
chr1 (59-167)||(51988062-51988172)
chr1 (19-64)||(8100082-8100127)
chr1 (19-64)||(8100740-8100785)
chr1 (59-97)||(8100172-8100210)
[»] chr6 (2 HSPs)
chr6 (59-109)||(7532112-7532162)
chr6 (99-167)||(7532186-7532254)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 5e-75; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 8100362 - 8100208
Alignment:
Q  243 gttatagttaagctctttgaaatataattctctctgaaatttaacaggtaaaaagagttacactataggactaaatcagttttctgatttaagcgtggaa 342  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8100362 gttatagttaagctctttgaaatataattctctctgaaatttcacaggtaaaaagagttacaccataggactaaatcagttttctgatttaagcgtggaa 8100263  T
Q  343 gaaaatatgacatgtgtattagacactcataacctactgtaatcttcatactcct 397  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8100262 gaaaatatgacatgagtattagacactcataacctactgtaatcttcatactcct 8100208  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 59 - 178
Target Start/End: Complemental strand, 8100695 - 8100576
Alignment:
Q  59 caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatatgccaaattcatttannnnnnncacactttcttctcaatacagaaacata 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||| |||||||    
T  8100695 caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatatgtcaaattcatttatttttttcacactttcttctcaatacataaacata 8100596  T
Q  159 ttgcttaaatttttattcac 178  Q
    ||||||||||||||||||||    
T  8100595 ttgcttaaatttttattcac 8100576  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 51988172 - 51988062
Alignment:
Q  59 caaaaagaagttggagcatatccatgagtttaacaaaggttatatat--atatgccaaattcatttannnnnnncacactttcttctcaatacagaaaca 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||       ||||||||||||||||||||||||||    
T  51988172 caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatatatgccaaattcatttatttttttcacactttcttctcaatacagaaaca 51988073  T
Q  157 tattgcttaaa 167  Q
    |||||||||||    
T  51988072 tattgcttaaa 51988062  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 8100082 - 8100127
Alignment:
Q  19 atacgtggatcaagcttttgctgagtggatgttgcttcaccaaaaa 64  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  8100082 atacgtggatcaagcttttgctgagtggatgttgctccaccaaaaa 8100127  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8100785 - 8100740
Alignment:
Q  19 atacgtggatcaagcttttgctgagtggatgttgcttcaccaaaaa 64  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  8100785 atacgtggatcaagcttttgctgagtggatgttgctccaccaaaaa 8100740  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 97
Target Start/End: Original strand, 8100172 - 8100210
Alignment:
Q  59 caaaaagaagttggagcatatccatgagtttaacaaagg 97  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8100172 caaaaagaagttggagcatatccatgagtttaacaaagg 8100210  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 7532112 - 7532162
Alignment:
Q  59 caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7532112 caaaaagaagttggagcatatccatgagtttaacaaaggttatatatatat 7532162  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 7532186 - 7532254
Alignment:
Q  99 tatatatatatgccaaattcatttannnnnnncacactttcttctcaatacagaaacatattgcttaaa 167  Q
    |||||||||||||||||||||||||       ||||||||||||||||| |||||||||||||||||||    
T  7532186 tatatatatatgccaaattcatttatttttttcacactttcttctcaatgcagaaacatattgcttaaa 7532254  T

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