View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_high_15 (Length: 386)
Name: NF15376_high_15
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_high_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 5 - 386
Target Start/End: Original strand, 47179921 - 47180301
Alignment:
| Q |
5 |
atagggaaaatgaccaaaaactcacacacatccactccttgtatgatgacaaaagaaagagggtgcaagtactttcaataatttcaaaagttaacatagg |
104 |
Q |
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| T |
47179921 |
atagggaaaatgaccaaaaactcacacacatccactccttgtatgatgacaaaagaaagagggtgcaagtactttcaataatttcaaaagttaacatagg |
47180020 |
T |
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| Q |
105 |
gtagtcaattcagccagcaaaagatgaaaagaaactgtgatgacttcagtcattcaccctgaaaacctcatctctgtgagcttacctagcttctatttct |
204 |
Q |
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| T |
47180021 |
gtagtcaattcagccagcaaaagatgaaaagaaactgtgatgacttcagtcattcaccctgaaaacctcatctctgtgagcttacctagcttctatttct |
47180120 |
T |
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| Q |
205 |
cctnnnnnnnntattcaaaaaacgccaaatttattcttctaggttctagctatttggttcccttaaaacttgatgagatgcattgaatcattgagcattt |
304 |
Q |
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| T |
47180121 |
cct-aaaaaaatattcaaaaaacgccaaatttattcttctaggttctagctatttggttcccttaaaacttgatgagatgcattgaatcattgagcattt |
47180219 |
T |
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| Q |
305 |
tattgtatttatttgtatcaatgatcaaaggcaaacctctcgtcatccctactactattgcatatagtcattccttcctttc |
386 |
Q |
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| T |
47180220 |
tattgtatttatttgtatcaatgatcaaaagcaaacctctcgtcatccctactactattgcatatagccattccttcctttc |
47180301 |
T |
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