View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15376_high_9 (Length: 495)

Name: NF15376_high_9
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15376_high_9
NF15376_high_9
[»] chr8 (7 HSPs)
chr8 (1-478)||(1092690-1093167)
chr8 (353-478)||(26395976-26396101)
chr8 (360-478)||(26168372-26168490)
chr8 (352-478)||(25224892-25225018)
chr8 (201-303)||(25225067-25225169)
chr8 (201-303)||(26168213-26168315)
chr8 (223-303)||(26395846-26395926)
[»] chr7 (4 HSPs)
chr7 (128-478)||(29462555-29462903)
chr7 (132-474)||(19890171-19890511)
chr7 (153-478)||(19844333-19844658)
chr7 (416-477)||(19877563-19877624)
[»] chr4 (3 HSPs)
chr4 (132-478)||(49465278-49465622)
chr4 (201-303)||(8348970-8349072)
chr4 (352-478)||(8349121-8349247)


Alignment Details
Target: chr8 (Bit Score: 470; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 1092690 - 1093167
Alignment:
Q  1 atcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaattctataggtagtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1092690 atcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaattctataggtagtaa 1092789  T
Q  101 ttccatgctttgttagagtcataatacacttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccacta 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1092790 ttccatgctttgttagagtcataatacacttccattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccacta 1092889  T
Q  201 attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1092890 attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaaaattccacgcat 1092989  T
Q  301 gttccatactgggaagatggaaatctccgaagactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1092990 gttccatactgggaagatggaaatctccgaagactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagct 1093089  T
Q  401 cgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaatt 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1093090 cgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaatt 1093167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 478
Target Start/End: Original strand, 26395976 - 26396101
Alignment:
Q  353 ttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggat 452  Q
    |||||| ||||||||||||||||||| | ||| |||    |||||||||| ||| | ||||||||| | ||||||| || ||||||  | ||||||||||    
T  26395976 ttgagtgttcccatcatagacctcaagggcattcacgttgatccagctcgtcgtattgaggtaattagtcaaattcgaactgcatgtaaggagtggggat 26396075  T
Q  453 tttttcagataattaatcatgaaatt 478  Q
    |||||||  | |||||||||||||||    
T  26396076 tttttcaagtgattaatcatgaaatt 26396101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 478
Target Start/End: Original strand, 26168372 - 26168490
Alignment:
Q  360 ttcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggattttttca 459  Q
    ||||||||||||||||||||||||| ||||   ||||  |||| ||||| || ||||||  |||||| | ||  |||||| | |||||||||||||||||    
T  26168372 ttcccatcatagacctcaaagacatccacattgatccctctcgtcgtgttgaagtaattaaccaaatccgaaccgcatgcaaggagtggggattttttca 26168471  T
Q  460 gataattaatcatgaaatt 478  Q
      | |||||||||| ||||    
T  26168472 agtgattaatcatggaatt 26168490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 478
Target Start/End: Complemental strand, 25225018 - 25224892
Alignment:
Q  352 gttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtgggga 451  Q
    ||||||| |||||||||||||| |||||||||| ||||   ||||  |||| ||||| || ||||||  |||||||| |   |||||| | |||| ||||    
T  25225018 gttgagtgttcccatcatagacttcaaagacatccacattgatccttctcgtcgtgttgaagtaattaaccaaattcgatccgcatgcaaggagtaggga 25224919  T
Q  452 ttttttcagataattaatcatgaaatt 478  Q
    ||||||||  | |||||||||| ||||    
T  25224918 ttttttcaagtgattaatcatggaatt 25224892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 25225169 - 25225067
Alignment:
Q  201 attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat 300  Q
    ||||||| ||||||||| | | |||||||||||||||||||||||| ||| | ||||| | |||| |  |||||  ||||||| | ||||| || |||||    
T  25225169 attccacatatgatagaaatgttgaagtgaaagcttttgatgattcgaaacttggtgttagaggtcttatggagcgtggggtgacaaagatcccgcgcat 25225070  T
Q  301 gtt 303  Q
    |||    
T  25225069 gtt 25225067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 26168213 - 26168315
Alignment:
Q  201 attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat 300  Q
    ||||||| ||||||||| | | |||| |||||| |||||||||||||||| | ||||| | |||| |  |||||  ||||||| | ||||| ||||||||    
T  26168213 attccacatatgatagaaatgatgaattgaaagtttttgatgattcaaaacttggtgtaagaggtcttatggagcgtggggtgacaaagatcccacgcat 26168312  T
Q  301 gtt 303  Q
    |||    
T  26168313 gtt 26168315  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 26395846 - 26395926
Alignment:
Q  223 tgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgtt 303  Q
    |||||||||||||||||| || |||||||| ||||| | |||| | ||||||  ||||||  | ||||| |||||||||||    
T  26395846 tgaagtgaaagcttttgaagaatcaaaagttggtgtaagaggtcttgtggagagtggggtaacaaagatcccacgcatgtt 26395926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 128 - 478
Target Start/End: Original strand, 29462555 - 29462903
Alignment:
Q  128 acttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaag 227  Q
    |||| ||||||||||||||||   ||| |||| ||||||||  ||||| ||||||||||| ||||| ||| | ||| |||||||||||||||||| ||||    
T  29462555 acttttattctggtgttgtttg--cctatcaatatggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaag 29462652  T
Q  228 tgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctc 327  Q
    | ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||| ||||| ||||||||||    
T  29462653 ttaaagcttttgatgattcaaaagttggtgtcaaaggtttggtggattctggggtgtcaaagattccacgcatgttctacactaggaagttggaaatctc 29462752  T
Q  328 cgaagactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaatt 427  Q
     |||  | |||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||| |||||||||||  |||||||||||||||| |||||||    
T  29462753 tgaaagcacagctagtgactccaagttgagtattcctatcgtagacctcaaagatatacacatcaatccagctcagcgtgtagaggtaattgaccaaatt 29462852  T
Q  428 caaagtgcatgccatgagtggggattttttcagataattaatcatgaaatt 478  Q
    | ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  29462853 cgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaatt 29462903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 132 - 474
Target Start/End: Original strand, 19890171 - 19890511
Alignment:
Q  132 ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa 231  Q
    ||||| |||||||||||   |||||||| |||||||| ||||||||||| || ||||||||| | ||||||||||||||||||||| || | ||||||||    
T  19890171 ctattttggtgttgtttt--cctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacagaagtgaa 19890268  T
Q  232 agcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctccgaa 331  Q
    |  |||||||||||||||||  ||||||| |||||||||||||  ||||||||| ||||| || ||||| || ||||| || ||| |||| |||   |||    
T  19890269 aaattttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcataccggtaagttggatatcggtgaa 19890368  T
Q  332 gactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaa 431  Q
     |||| |||||||| || || |||||| |||||||| ||||||||||||| ||||||| | ||| |||||  ||||| ||||||||||  ||||||||||    
T  19890369 aactcggctagtgattctaaattgagtgttcccatcgtagacctcaaagatatacacatcgatcaagctcagcgtgtcgaggtaattgaacaaattcaaa 19890468  T
Q  432 gtgcatgccatgagtggggattttttcagataattaatcatga 474  Q
    ||||||| |||| | | |||||||||||| |||||||||||||    
T  19890469 gtgcatgtcatgtgggtggattttttcaggtaattaatcatga 19890511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 153 - 478
Target Start/End: Original strand, 19844333 - 19844658
Alignment:
Q  153 ctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagt 252  Q
    ||||||| |||||||| |||||| |||||||| ||||  || ||||||||||||||||||||||| |   |||||||||||||||||||||||||||||     
T  19844333 ctctcaatatggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagcttttgatgattcaaaagc 19844432  T
Q  253 aggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctccgaagactcagctagtgagtccaag 352  Q
     ||||| | ||||||||||||||| || ||||||||||| ||||  |||||||||| || || | |||| ||  |   | | |||  | |||| || |||    
T  19844433 tggtgtgagaggtttggtggagtccggagtgtcgaagatcccacagatgttccataatgagatgttggacattgctacaaagtcaatttgtgactctaag 19844532  T
Q  353 ttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggat 452  Q
    |||| |||||||||||| ||||||||||  ||| ||| ||||||| |||  |||| ||||||||||||| |||||| ||||||||| |||||||||||||    
T  19844533 ttgaatattcccatcattgacctcaaaggtatagacatcaatccaactctgcgtgaagaggtaattggcaaaattcgaagtgcatgtcatgagtggggat 19844632  T
Q  453 tttttcagataattaatcatgaaatt 478  Q
    |||||||| | |||||||||||||||    
T  19844633 tttttcaggtgattaatcatgaaatt 19844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 477
Target Start/End: Complemental strand, 19877624 - 19877563
Alignment:
Q  416 attggccaaattcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaat 477  Q
    |||||||| |||||||| || ||| |||||||||||||||||||  | ||||||||||||||    
T  19877624 attggccagattcaaagagcctgcaatgagtggggattttttcaagtgattaatcatgaaat 19877563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 132 - 478
Target Start/End: Complemental strand, 49465622 - 49465278
Alignment:
Q  132 ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa 231  Q
    |||||||||| |||||||  | ||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  49465622 ctattctggttttgtttc--cttctcaacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctgaagtgaa 49465525  T
Q  232 agcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctccgaa 331  Q
    ||||||||||||||||  || ||| ||||| |||||||| ||||||||||| || ||||| |||||| | |||||| | |||||| |||| |||   |||    
T  49465524 agcttttgatgattcacgagcaggcgtcaatggtttggttgagtctggggtttcaaagatcccacgctttttccatgccgggaagttggacatcggtgaa 49465425  T
Q  332 gactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaa 431  Q
     ||||| || |||| |||||||||||| |||| ||  ||||||||||||||||||||||||||||||||| ||||||||| ||||||   ||||||| ||    
T  49465424 aactcaacttgtgactccaagttgagtgttccgattgtagacctcaaagacatacacaacaatccagctcaacgtgtagatgtaattcatcaaattcgaa 49465325  T
Q  432 gtgcatgccatgagtggggattttttcagataattaatcatgaaatt 478  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||    
T  49465324 gtgcatgccatgagtggggattttttcaggtgattaatcatgaaatt 49465278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 8348970 - 8349072
Alignment:
Q  201 attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat 300  Q
    ||||||| ||||||||| | |||||||||||||||||||||||||||||| | ||||| | |||| |  |||||  ||||||  | ||||| ||||||||    
T  8348970 attccacatatgatagaaatgctgaagtgaaagcttttgatgattcaaaacttggtgttagaggtcttatggagcgtggggtaacaaagatcccacgcat 8349069  T
Q  301 gtt 303  Q
    |||    
T  8349070 gtt 8349072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 478
Target Start/End: Original strand, 8349121 - 8349247
Alignment:
Q  352 gttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtgggga 451  Q
    ||||||| |||| |||||||| ||||||||||| ||||   ||||  |||| ||||| || ||||||  |||||||| || ||||||| | |||||||||    
T  8349121 gttgagtgttcctatcatagatctcaaagacatccacatttatccttctcgtcgtgttgaagtaattaaccaaattcgaactgcatgcaaggagtgggga 8349220  T
Q  452 ttttttcagataattaatcatgaaatt 478  Q
    |||||| |  | |||||||||| ||||    
T  8349221 ttttttaaagtgattaatcatggaatt 8349247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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