View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_11 (Length: 489)
Name: NF15376_low_11
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 45594658 - 45594993
Alignment:
| Q |
18 |
cttccagctgaatttgtttcagattgtgttatgagtcattctttcaccaatgtgttaacttgtgaaggaaaaagcttttgctttaacttgagtaggcttt |
117 |
Q |
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| T |
45594658 |
cttccagctgaatttgtttcagattgtgttatgagtcattctttcaccaatgtgttaacttgtgaaggaaaatgcttttgctttaacttgagtaggcttt |
45594757 |
T |
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| Q |
118 |
ttatactgtaggtggtgattctttccgacataaacaatcaggtaaaggatttgcataaaatgtttcttctgaacgaaacctgtccactccctttgttcca |
217 |
Q |
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| T |
45594758 |
ttatactgtaggtggtgattctttacgacataaacaatcaggtaaaggatttgcataaaatgtttcttctgaacgaaacctgtccactccctttgttcca |
45594857 |
T |
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| Q |
218 |
ggaatgggtccttttctcttccttaataagccaaccctacccaaacacaccacaaaccaaatatcaatcaaataaataaattgttttaatcattattagt |
317 |
Q |
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| T |
45594858 |
ggaatgggtccttttctcttccttaataagccaacccta-ccaaacacaccacaaaccaaatatcaatcaaataaataaattgttttaatc---attagt |
45594953 |
T |
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| Q |
318 |
ataatctgaggtgtaaacatgtctctgaatgagtaatatg |
357 |
Q |
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| T |
45594954 |
ataatctgaggtgtaaacatgtctctgaatgagtaatatg |
45594993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 45595072 - 45595192
Alignment:
| Q |
352 |
aatatgatatacgatatgtatataaaacatatttatccaacttattattaaactacttgacatttacattaatgtttttctattttttccaattacatac |
451 |
Q |
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| T |
45595072 |
aatatgatatacgatatgtatataaaacatatttatccaact-attattaaactacttgacatttacattaatgtttttctattttttccaattacatac |
45595170 |
T |
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| Q |
452 |
cttcctttgtggagatcattca |
473 |
Q |
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| T |
45595171 |
cttcctttgtggagatcattca |
45595192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 240
Target Start/End: Original strand, 27147945 - 27148054
Alignment:
| Q |
131 |
ggtgattctttccgacataaacaatcaggtaaaggatttgcataaaatgtttcttctgaacgaaacctgtccactccctttgttccaggaatgggtcctt |
230 |
Q |
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|||| |||| |||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| ||||||| |
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| T |
27147945 |
ggtggttctgtccggcataaacaatcaggtaagggattagcataaaaggtttcttctgagcgaaacctgtccatgccctttgttccagaaattggtcctt |
27148044 |
T |
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| Q |
231 |
ttctcttcct |
240 |
Q |
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| T |
27148045 |
ttcttttcct |
27148054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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