View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_12 (Length: 488)
Name: NF15376_low_12
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 34428337 - 34428815
Alignment:
| Q |
1 |
acttaataattatatttatgattcatttttcttccatggttttcttaactttcttgtttcaatcttttacataccttgtgactgaaatttcagctgaaaa |
100 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34428337 |
acttagtaattatatttatgattcatttttcttacatggttttcttaactttcctgtttcaatcttttacataccttgtgactgaaatttcagctgaaaa |
34428436 |
T |
|
| Q |
101 |
tagaacatagcnnnnnnnn-ggtgtcggttattaatattattgtcatattgtaacattattaagcggtgttgacacataatacactagtgttagttaact |
199 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34428437 |
tagaccatagcaaaaaaaaaggtgtcggttattaatattattgtcatattgtaacattattaagcggtggtgacacataatacactagtgttagttaact |
34428536 |
T |
|
| Q |
200 |
tgtttgttacatatgtttccttttaactt-gtttagtattctatttaa-tttccattacattttgttgttgtgactgcagatagattgaatgttgtgaag |
297 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34428537 |
tgtttgttacatatgtttccttttaactttgtttagtattctatttaaatttccattacattttgttgttgtgactgcagatagattgaatgttgtgaag |
34428636 |
T |
|
| Q |
298 |
agagaaatgggtttttcaaaggattcatgctgtgtttttatgctgcaactgttgattgtggtttgccttgtggttcaatgctttgatgtgcaagtgcagg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34428637 |
agagaaatgggtttttcaaaggattcatgctgtgtttttatgctgcaactgttgattgtggtttaccttgtggttcaatgctttgatgtgcaagtgcagg |
34428736 |
T |
|
| Q |
398 |
ctgatttgaatgctacactggttgtagatgcttctcaggcatctggaagacgaataccagagactctttttggaatatt |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34428737 |
ctgatttgaatgctacactggttgtagatgcttctcaggcatctggaagacgaataccggagactctttttggaatatt |
34428815 |
T |
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