View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_13 (Length: 464)
Name: NF15376_low_13
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 48636919 - 48637367
Alignment:
| Q |
1 |
taggttcttaattaagaaagaaaaggtctgtagttactaggtttttattcttctatagtttataagtcaaaatagattgatgaggttgttgatttagccg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48636919 |
taggtttttaattaagaaagaaaaggtctgtagttactaggtttttattcttctatagtttataagtcaaaatagattgatgaggttgttgatttagccg |
48637018 |
T |
|
| Q |
101 |
tggtgtcaacattcgtgatggttgaagatttaaatggcatagcttagtaatttgttataacctaatgatgtaaaattcttaatatcgtatgcaggttgcg |
200 |
Q |
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| T |
48637019 |
tggtgtcaacattcgtgatggttgaagatttaaatggcatagcttagtaatttgttataacctaatgacgtaaaattcttaatatcgtatgcaggttgcg |
48637118 |
T |
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| Q |
201 |
cctccaaatgatgacgtgggagctcaatttgggccgaaaaactcccctgtcgtcgaatggatacgtggtctcgggttagctaagtacgaagaagtttttg |
300 |
Q |
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| T |
48637119 |
cctccaaatgatgatgtgggagctcaatttgggccgaaaaactcccctgtcgtcgaatggatacgtggtcttgggttagctaagtacgaagaagtttttg |
48637218 |
T |
|
| Q |
301 |
ttagggaagaagttgattgggataccttgcaatggctgacagaagaggtgagtttatgttctgttcattttctcatttcacaccatcagtcctaggatct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48637219 |
ttagggaagaagttgattgggataccttgcaatggctgacagaagaggtgagtttatgttctgttcattttctcatttcacaccatcagtcctaggatct |
48637318 |
T |
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| Q |
401 |
tatctttgccacagagacttattccttgaatttatttgactgttctttg |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48637319 |
tatctttgccacagagacttattccttgaatttatttgactgttctttg |
48637367 |
T |
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