View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15376_low_14 (Length: 435)
Name: NF15376_low_14
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_14 |
 | |
|
| [»] scaffold0236 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 161 - 419
Target Start/End: Complemental strand, 27668321 - 27668081
Alignment:
| Q |
161 |
ttgctttaaccatgttggtttacattttctttctcgtagacaacgtaaatggtcttggccttttgatcctcgcctttcaactccacacccaaatcattta |
260 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27668321 |
ttgctttaaccatgttggtttccattttctttctcgtagacaacgtaaatggtcttagccttttgatcctcgcctttcaactccacacccaaatcattta |
27668222 |
T |
|
| Q |
261 |
tcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgtttgatttatggttcatttttcatacttccaacaatgatgaa |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27668221 |
tcttgactccgtcaacatcactaacctcaatactgaagccg------------------ttgatttatggttcatttttcatacttccaacaatgatgaa |
27668140 |
T |
|
| Q |
361 |
tgacctacttcatgcagtgaccttgaggttacggttctgtagtttggaaaagagaatat |
419 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27668139 |
tgacctacttcatgcagtgaccttggggttacggttctgtagtttggaaaagagaatat |
27668081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 51 - 151
Target Start/End: Complemental strand, 27668515 - 27668417
Alignment:
| Q |
51 |
atctcaaaaaactaacgttactccgataattcgagattcgtcattcaaacaagctctttgcacctttgttgaagtctttgcatggcatatcattcaagca |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
|
|
| T |
27668515 |
atctcaaaaaactaacgttactccgataatttgagattcgtcattcaaacaagctcttt--acatttgttgaagcttttgcatggcatatcattcaagca |
27668418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 220 - 356
Target Start/End: Original strand, 27668773 - 27668909
Alignment:
| Q |
220 |
cttttgatcctcgcctttcaactccacacccaaatcatttatcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgt |
319 |
Q |
| |
|
|||||||| | | |||||||||||||||| | || |||||| ||||||||| ||||||||||||||||||||| |||| | |||||||||||||||| | |
|
|
| T |
27668773 |
cttttgatacccacctttcaactccacactccaaccatttaccttgactcctccaacatcactaacctcaataccgaagcccttgatttaacggccatat |
27668872 |
T |
|
| Q |
320 |
ttgatttatggttcatttttcatacttccaacaatga |
356 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
27668873 |
ttgatttatggttcatatttcatactcacaacaatga |
27668909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 213 - 365
Target Start/End: Original strand, 27673541 - 27673693
Alignment:
| Q |
213 |
tcttggccttttgatcctcgcctttcaactccacacccaaatcatttatcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacg |
312 |
Q |
| |
|
|||| |||||||||| | | ||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||| |||| | || | |||| |
|
|
| T |
27673541 |
tcttagccttttgatacccacctttcaactcaacaccccaagcatttatcttgactccgtcaacataactaacctcaataccgaagcccttaacttaata |
27673640 |
T |
|
| Q |
313 |
gccatgtttgatttatggttcatttttcatacttccaacaatgatgaatgacc |
365 |
Q |
| |
|
|||| |||||||| || |||||||||||||||| |||||||||||||| |||| |
|
|
| T |
27673641 |
gccacgtttgattcatcgttcatttttcatactcccaacaatgatgaacgacc |
27673693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 339
Target Start/End: Original strand, 8954 - 9033
Alignment:
| Q |
260 |
atcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgtttgatttatggttcattttt |
339 |
Q |
| |
|
||||||| ||||| |||||||| ||||| ||||| ||| |||| |||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
8954 |
atcttgattccgttaacatcaccaaccttaataccaaagccgttaatttaacggccacgtttgatttatcgtttattttt |
9033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University