View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_17 (Length: 392)
Name: NF15376_low_17
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 374
Target Start/End: Complemental strand, 36391542 - 36391197
Alignment:
| Q |
30 |
aacacaatgtcttcttcaacagcagtattacttgccactgtctctacagctcgcatgtcagccgtgccatattctctatttgcttttttccgaagcattt |
129 |
Q |
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|||||| || ||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36391542 |
aacacagtgccttcttcaacagcagtattacctgccattgtctctacagcttgcatgtcagccgtgccatattctctatttgcttttttccgaagcattt |
36391443 |
T |
|
| Q |
130 |
cttcactgcctttttctgacgtgttcttccacgcttatttctacaaactcattaaaacactataatttgttgtagtgttctcaaattaaattaatttcaa |
229 |
Q |
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||||||||||| |||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| || |
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| T |
36391442 |
cttcactgcctctttccgatgtgttcatccacgcttatttctacaaactcattaaaacactctaatttgttgtagtgttctcaaattcaattcattttaa |
36391343 |
T |
|
| Q |
230 |
tcgtattcggtaaattaaacaaggtttaaagacaaatcaaaagaaagatttgatcgtgatatttgttgtagtgtctacaacttcattagatttgaaaatt |
329 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36391342 |
tcgtattcggtaaattaaacagggtttaatcacaaatcaaaagaaagatgtgatcgtgatatttgttgtagtgtctacaacttcattagatttgaaaatt |
36391243 |
T |
|
| Q |
330 |
cattagatttgga-gataaataaatttaattattgtttgtgattta |
374 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
36391242 |
cattagatttggaggataaataaatttaaatattgtttgtgattta |
36391197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 29921016 - 29920962
Alignment:
| Q |
321 |
ttgaaaattcattagatttggaga-taaataaatttaattattgtttgtgattta |
374 |
Q |
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||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
29921016 |
ttgaaaattgattagatttagagaataaataaatttaattattgtttgtgattta |
29920962 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 40449660 - 40449825
Alignment:
| Q |
41 |
ttcttcaacagcagtattacttgccactgtctctacagctcgcatgtcagccgtgccatattctctatttgcttttttccgaagca--tttcttcactgc |
138 |
Q |
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|||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40449660 |
ttcttcaacagcagtattacctgctattgtctctacagctcgcatgtcagccgtgccatattctctatttgcttttttccgaagcatttttcttcactgc |
40449759 |
T |
|
| Q |
139 |
ctttttctgacgtgttcttccacgcttatttctacaaactcattaaaacactataatttgttgtag |
204 |
Q |
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|| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40449760 |
ctctttccgacgtgttcatccacgcttatttctacaaactcattaaaacactctaatttgttgtag |
40449825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 195 - 374
Target Start/End: Original strand, 40450619 - 40450787
Alignment:
| Q |
195 |
tttgttgtagtgttctcaaattaaattaatttcaatcgtattcggtaaattaaacaaggtttaaagacaaatcaaaagaaagatttgatcgtgatatttg |
294 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
40450619 |
tttgttgtagtgttctcaaattcaattcatttcaatcgtattcggtaaattaa------------gacaaatcaaaagaaagatgcgatcgtgatatttg |
40450706 |
T |
|
| Q |
295 |
ttgtagtgtctacaacttcattagatttgaaaattcattagatttgga-gataaataaatttaattattgtttgtgattta |
374 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
40450707 |
ttgtagtgtctacaacttcattagatatgaaaattcattagatttggaggataaataaatttaattattgtttgtgattta |
40450787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 374
Target Start/End: Original strand, 41348689 - 41348743
Alignment:
| Q |
321 |
ttgaaaattcattagatttggaga-taaataaatttaattattgtttgtgattta |
374 |
Q |
| |
|
||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| |
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|
| T |
41348689 |
ttgaaaatttattagatttagagaataaataaatttaattattgtttgtgattta |
41348743 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 35758694 - 35758640
Alignment:
| Q |
321 |
ttgaaaattcattagatttggaga-taaataaatttaattattgtttgtgattta |
374 |
Q |
| |
|
||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||| |
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|
| T |
35758694 |
ttgaaaatttattagatttagagaataaataaatttaattattgtctgtgattta |
35758640 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 10501710 - 10501758
Alignment:
| Q |
323 |
gaaaattcattagatttggaga-taaataaatttaattattgtttgtga |
370 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||| |||||||||||| |
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|
| T |
10501710 |
gaaatttcattagatttggataataaataaatttaactattgtttgtga |
10501758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 8653111 - 8653042
Alignment:
| Q |
299 |
agtgtctacaacttcattagatttgaaaattcattagatttgga-gataaataaatttaattattgtttg |
367 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
8653111 |
agtgtccacaacttcattagatttgaaaattcattagatttggataataaataaatttaattactgtttg |
8653042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 35107141 - 35107213
Alignment:
| Q |
113 |
ttttttccgaagcatttcttcactgcctttttctgacgtgttcttccacgcttatttctacaaactcattaaa |
185 |
Q |
| |
|
|||||| ||||||||||||||||| | | ||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
35107141 |
tttttttcgaagcatttcttcacttcttattttcgacgtgttcatccacgcttatttctacaaactcattaaa |
35107213 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 374
Target Start/End: Complemental strand, 21982809 - 21982755
Alignment:
| Q |
321 |
ttgaaaattcattagatttggag-ataaataaatttaattattgtttgtgattta |
374 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||| |
|
|
| T |
21982809 |
ttgaaaattcattagatttggagaataaataaatttaattactatttatgattta |
21982755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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