View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_19 (Length: 381)
Name: NF15376_low_19
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 220 - 342
Target Start/End: Original strand, 39988265 - 39988388
Alignment:
| Q |
220 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgtgaaggattttttgaaattgactttattcatatgtttacgtt-nnnnnnngtgtttttga |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
39988265 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgtgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaaagtgtttttga |
39988364 |
T |
|
| Q |
319 |
tgtttatgtagttttgctgtttct |
342 |
Q |
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|||||||||||||||||||||||| |
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| T |
39988365 |
tgtttatgtagttttgctgtttct |
39988388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3820892 - 3820789
Alignment:
| Q |
1 |
gaaatgagataatgatgagttaattccagtagctttatgagttttatttcggttaaaagagataaacgaaaatgaaggaaatggaaatggccaatccaga |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
3820892 |
gaaatgagataatgatgagttaattccggtagctttatgagttttatttcggttaaaagatataaatgaaaatgaaggaaatggaaatggccaatcgaga |
3820793 |
T |
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| Q |
101 |
ggcg |
104 |
Q |
| |
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|||| |
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| T |
3820792 |
ggcg |
3820789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 14 - 104
Target Start/End: Original strand, 39988057 - 39988147
Alignment:
| Q |
14 |
gatgagttaattccagtagctttatgagttttatttcggttaaaagagataaacgaaaatgaaggaaatggaaatggccaatccagaggcg |
104 |
Q |
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| T |
39988057 |
gatgagttaattccagtagctttatgagttttatttcggttaaaagagataaatgaaaatgaaggaaatggaaatggccaatccagaggcg |
39988147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 3820671 - 3820590
Alignment:
| Q |
220 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgtgaaggattttttgaaattgactttattcatatgtttacgtt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
3820671 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgcgaaggattttctgaaattgactttattcatatgtttacgtt |
3820590 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39656456 - 39656559
Alignment:
| Q |
1 |
gaaatgagataatgatgagttaattccagtagctttatgagttttatttcggttaaaagagataaacgaaaatgaaggaaatggaaatggccaatccaga |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |
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| T |
39656456 |
gaaatgagataatgatgagttaattccggtagctttatgagttttatttcggttaaaagatataaatgaaaatgaaggaaatggaaatggccaatcgaga |
39656555 |
T |
|
| Q |
101 |
ggcg |
104 |
Q |
| |
|
|||| |
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|
| T |
39656556 |
ggcg |
39656559 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 220 - 327
Target Start/End: Original strand, 39656687 - 39656794
Alignment:
| Q |
220 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgtgaaggattttttgaaattgactttattcatatgtttacgttnnnnnnngtgtttttgat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39656687 |
ggtaaagatgaaaataatgatgaagaagatgaacaatttgcgaaggattttctgaaattgactttattcatatgtttacgttaaaaaaagtgtttttgat |
39656786 |
T |
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| Q |
320 |
gtttatgt |
327 |
Q |
| |
|
|||||||| |
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|
| T |
39656787 |
gtttatgt |
39656794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 34365080 - 34365141
Alignment:
| Q |
266 |
attttttgaaattgactttattcatatgtttacgttnnnnnnngtgtttttgatgtttatgt |
327 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
34365080 |
attttctgaaattgactttattcatatgtttacgttaaaaaaagtgtttttgatatttatgt |
34365141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 34365146 - 34365175
Alignment:
| Q |
317 |
gatgtttatgtagttttgctgtttctcgtg |
346 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34365146 |
gatgtttatgtagttttgctgtttctcgtg |
34365175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 39656799 - 39656828
Alignment:
| Q |
317 |
gatgtttatgtagttttgctgtttctcgtg |
346 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39656799 |
gatgtttatgtagttttgctgtttctcgtg |
39656828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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