View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_20 (Length: 330)
Name: NF15376_low_20
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 50778844 - 50779128
Alignment:
| Q |
1 |
tgtatggatcgatggatgagagagaattagaggaggcagaaaataaatgatttactagttaactaaggtttgggagattaattaaatgaagtttgtaagt |
100 |
Q |
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| T |
50778844 |
tgtatggatcgatggatgagagagaattagaggaggcagaaaataaatgatttactagttaactaaggtttgggagattaattaaatgaagtttgtaagt |
50778943 |
T |
|
| Q |
101 |
actagtatgactcttttgactttctttgctttgtttgcgtgctcattaggtttatcgtttactgtttctttacttggacatgctatgctacccatcctca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50778944 |
actagtatgactcttttgactttctttgctttgtttgcgtgctcattaggtttatcgtttactgt--------ttggacatgctatgctacccatcctca |
50779035 |
T |
|
| Q |
201 |
caactcaacnnnnnnnctttctttcttgattattattcaccccgtcacattttagatgcccatttaaaaatgatttacataaaaagtttatttcttaatg |
300 |
Q |
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||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50779036 |
caactcaactttttttctttctttcttgattatta----------------ttagatg-ccatttaaaaatgatttacataaaaagtttatttcttaatg |
50779118 |
T |
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