View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_21 (Length: 327)
Name: NF15376_low_21
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 480901 - 480594
Alignment:
| Q |
20 |
ctcgttccatcaaaacaaccttcgaatacacatactaataccaacacagtttcgttgcatcgaaaaggatgcttatagagtaaatgcttaaaatactcat |
119 |
Q |
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| T |
480901 |
ctcgttccatcaaaacaaccttcgaatacatatactaataccaacacagtttcgttgcatcgaaaaggatgcttatagagtaaatgcttaaaatactcat |
480802 |
T |
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| Q |
120 |
ttcagaacataactaaataagtacttcatactcattcgaaacgtggccttattcgtagaaaagtcactgtttttatttaacaaaattgggatgttataat |
219 |
Q |
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| T |
480801 |
ttcaaaacataactaaataagtacttcatactctttcgaaacgtggccttatttgtagaaaagtcaccgtttttatttaacaaaattgggatgttataat |
480702 |
T |
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| Q |
220 |
tttagtttatatgagaatatgcttgcttgaaaatttcataattgttgcgagagcattttgaatatatattttaacaattaggttgaagaaatcacttaag |
319 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480701 |
tttaatttatatgagaatatgcttgcttgaaaaattcataattgttgcgagagcattttgaatatatattttaacaattaggttgaagaaatcacttaag |
480602 |
T |
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| Q |
320 |
cattgatc |
327 |
Q |
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|||||||| |
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| T |
480601 |
cattgatc |
480594 |
T |
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