View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_23 (Length: 316)
Name: NF15376_low_23
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 27736348 - 27736584
Alignment:
| Q |
16 |
tgtttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaagtagaccaatatttgcctaaacaagtaaacctattcacagatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
27736348 |
tgtttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaagtagaccaagatttgcctaaacaagtaaacctattcacagatt |
27736447 |
T |
|
| Q |
116 |
tcaaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggttactaaccttttggcttgttgcagccatagttttctcaaaagcaaatgg |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27736448 |
tcaaaggtagttttgaaaaaatagaaaagacgatatcatcaggaacatggttactaaccttttggtttgttgcagccatagttttctcaaaagcaaatgg |
27736547 |
T |
|
| Q |
216 |
aaggaacgtgaaggctgtgatgtgagagaggaagatt |
252 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
27736548 |
aaggaacgtgaaggctgtgatgtgagagaggcagatt |
27736584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 27725102 - 27725280
Alignment:
| Q |
18 |
tttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaagtagaccaatatttgcctaaacaagtaaacctattcacagatttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
27725102 |
tttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaagtagaccaagatttgcctaaacaagtaaacctattcgcagatttc |
27725201 |
T |
|
| Q |
118 |
aaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggttactaaccttttggcttgttgcagccatag |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
27725202 |
aaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggttactaaccttttggtttgttggagccatag |
27725280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 27717758 - 27717937
Alignment:
| Q |
18 |
tttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaagtagaccaatatttgcctaaacaagtaaacctattcacagatttc |
117 |
Q |
| |
|
||||||||| |||| |||| |||||||||| |||||||||| ||||||||||||||||| |||| ||||| || ||| ||||||| |||||| |||||| |
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| T |
27717758 |
tttggaaaccatatatttggaaaacatgttcatgaaataagagttttcaaataaagtagtccaagatttggatacacatgtaaaccgattcacggatttc |
27717857 |
T |
|
| Q |
118 |
aaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggttactaaccttttggcttgttgcagccatagt |
197 |
Q |
| |
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| ||||||||||||||| ||||||||||||| ||| || |||||||| |||||||||||| |||||| ||||||||| |
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| T |
27717858 |
agaggtagttttgaaaatatagagaagacgacatcttcgggaacatgaagactaaccttttgatttgttggagccatagt |
27717937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 27596181 - 27596341
Alignment:
| Q |
18 |
tttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaagtagaccaatatttgcctaaacaagtaaacctattcacagatttc |
117 |
Q |
| |
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||||||||| |||||||||||||||||||| | |||||||| |||||||||||| || || |||| || ||||||||||| |||||||||||| |
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| T |
27596181 |
tttggaaaccatatttttgtaaaacatgttcacaaaataaggattttcaaataaaagagtgtaaagtttgtttacacaagtaaaccgtttcacagatttc |
27596280 |
T |
|
| Q |
118 |
aaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggttactaacctttt |
178 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||| |
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|
| T |
27596281 |
aaaggtagttttgaaagaatagagaagacgatatcttcaggaacatagatactaacctttt |
27596341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 27590133 - 27590293
Alignment:
| Q |
18 |
tttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaagtagaccaatatttgcctaaacaagtaaacctattcacagatttc |
117 |
Q |
| |
|
||||||||| ||||| |||||||||||||| | ||||||||||||||||||||| || ||||| |||| || ||||||||||| ||||||||||| |
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|
| T |
27590133 |
tttggaaaccatattattgtaaaacatgttcacaaaataagggttttcaaataaaagagtccaatgtttgtttatacaagtaaaccgcttcacagatttt |
27590232 |
T |
|
| Q |
118 |
aaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggttactaacctttt |
178 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||| ||| |||||| | || ||||||||| |
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|
| T |
27590233 |
aaaggtagtttcgaaagaatagagaagacgatatattcaagaacatagatattaacctttt |
27590293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 27084809 - 27084915
Alignment:
| Q |
68 |
ataaagtagaccaatatttgcctaaacaagtaaacctattcacagatttcaaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggtt |
167 |
Q |
| |
|
||||||||| |||| |||||| |||||| |||||||||||||| ||||||||||||||| || |||||||||||| || ||||| || |||||||| |
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| T |
27084809 |
ataaagtagtccaagatttgcataaacatgtaaacctattcacggatttcaaaggtagtctt--aaaaatagagaa-acaatatcttcgggaacatgaag |
27084905 |
T |
|
| Q |
168 |
actaaccttt |
177 |
Q |
| |
|
|||||||||| |
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|
| T |
27084906 |
actaaccttt |
27084915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 27736580 - 27736618
Alignment:
| Q |
276 |
agattgatgcggttaaggagtcgtatttatatccctatg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
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| T |
27736580 |
agattgatgcggttaaggagtcgtatttatatccgtatg |
27736618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 14682733 - 14682920
Alignment:
| Q |
18 |
tttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaagtagaccaatatttgcctaaacaagtaaacctattcacagatttc |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||| || |||| | ||||||||||||||||||| ||||| |||||| |
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|
| T |
14682733 |
tttgaaaacaatatttttgtaaaacatgttcataaaataagggttttcaaataaaagagtccaagacttgcctaaacaagtaaaccgattcaaagatttt |
14682832 |
T |
|
| Q |
118 |
aaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggttactaaccttttggcttgttgcagccatagttttctcaa |
205 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| |||||||| |
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|
| T |
14682833 |
aaaggtagttttgaaaaaatagaaaagacgatatcttcaggaacatggttactaaccttttggtttgttggagccataggtttctcaa |
14682920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 14682924 - 14682984
Alignment:
| Q |
243 |
gaggaagattactttggaaaaatcagatacaaaagattgatgcggttaaggagtcgtatttat |
305 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||||||||||||| || ||||| ||||||| |
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|
| T |
14682924 |
gaggcagattactttggaaaaatcagatgc--aagattgatgcggtaaaagagtcttatttat |
14682984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 19226189 - 19226376
Alignment:
| Q |
18 |
tttggaaacaatatttttgtaaaacatgttgatgaaataagggttttcaaataaagtagaccaatatttgcctaaacaagtaaacctattcacagatttc |
117 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||||| ||||||||| ||| || ||| |||||| || ||||||||| | ||| ||||||||| |
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|
| T |
19226189 |
tttggaaaacatagttttgtaaaacatgttcatgaaataagagttttcaaacaaaagagtccacgatttgcatacacaagtaaatcgatttacagatttc |
19226288 |
T |
|
| Q |
118 |
aaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggttactaaccttttggcttgttgcagccatagttttctcaaa |
206 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| ||||| ||||||| | |||||||||||| | |||| |||||||| ||||||||| |
|
|
| T |
19226289 |
aaaggtagttttgacaaaat-gagaacgtgatgtcatctggaacatagatactaaccttttcattcgttggagccatagatttctcaaa |
19226376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 19220794 - 19220627
Alignment:
| Q |
39 |
aaacatgttgatgaaataagggttttcaaataaagtagaccaatatttgcctaaacaagtaaacctattcacagatttcaaaggtagttttgaaaaaata |
138 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||| || ||| |||||| || ||||||||||| ||| ||||||||||||||||||||||| ||||| |
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| T |
19220794 |
aaacatgttcatgaaataagagttttcaaacaaaagagtccacgatttgcatacacaagtaaaccgatttacagatttcaaaggtagttttgacaaaatg |
19220695 |
T |
|
| Q |
139 |
gagaagacgatatcatcaggaacatggttactaaccttttggcttgttgcagccatagttttctcaaa |
206 |
Q |
| |
|
||||| ||| ||||| ||||||| | |||| ||||||| | |||| |||||||| ||||||||| |
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|
| T |
19220694 |
gagaacgtgatgtcatctggaacatagatactgaccttttcattcgttggagccatagatttctcaaa |
19220627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 39725468 - 39725537
Alignment:
| Q |
106 |
ttcacagatttcaaaggtagttttgaaaaaatagagaagacgatatcatcaggaacatggttactaacct |
175 |
Q |
| |
|
|||| |||||| ||||| |||||||| | |||||||||||| ||||||||||| ||||| || ||||||| |
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|
| T |
39725468 |
ttcaaagatttgaaaggaagttttgacagaatagagaagacaatatcatcaggtacatgattgctaacct |
39725537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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