View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15376_low_26 (Length: 288)

Name: NF15376_low_26
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15376_low_26
NF15376_low_26
[»] chr3 (15 HSPs)
chr3 (66-278)||(6246173-6246385)
chr3 (58-279)||(6260036-6260257)
chr3 (94-278)||(6266556-6266740)
chr3 (66-277)||(6169775-6169986)
chr3 (66-279)||(6143183-6143396)
chr3 (94-280)||(13269572-13269758)
chr3 (44-263)||(6238547-6238767)
chr3 (88-244)||(6900978-6901134)
chr3 (88-277)||(7750967-7751156)
chr3 (91-231)||(6590327-6590467)
chr3 (147-277)||(6917988-6918118)
chr3 (165-242)||(6849828-6849905)
chr3 (174-274)||(8472435-8472535)
chr3 (172-244)||(6721014-6721086)
chr3 (182-274)||(6837946-6838038)
[»] scaffold0425 (1 HSPs)
scaffold0425 (165-242)||(12936-13013)
[»] chr7 (1 HSPs)
chr7 (180-274)||(6572356-6572450)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 6e-74; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 66 - 278
Target Start/End: Complemental strand, 6246385 - 6246173
Alignment:
Q  66 atatcatggaagaggttattcatggtggggcatttctttcccctgtgattcgattgatttgtgagagtttagcttcaacagatttcagagaatacttcca 165  Q
    ||||||||| ||||||| ||  | || |||||||||||||||| || |||| ||||||||||||||| |||||||||||||||||||| || ||| ||||    
T  6246385 atatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttcagtgactacctcca 6246286  T
Q  166 tgaagagctggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacgtgaagaat 265  Q
    |||| |||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6246285 tgaaaagcttgtgaaaaaacttgaaatcacattggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaat 6246186  T
Q  266 tgggttgatgatg 278  Q
    |||||||||||||    
T  6246185 tgggttgatgatg 6246173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 58 - 279
Target Start/End: Complemental strand, 6260257 - 6260036
Alignment:
Q  58 aataatgaatatcatggaagaggttattcatggtggggcatttctttcccctgtgattcgattgatttgtgagagtttagcttcaacagatttcagagaa 157  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  6260257 aataatgaatatcatggaagatgtttttcatggtggggcatttctttcccctgtgattcgattgatttgtaagagtttagcttcaacagatttcagagac 6260158  T
Q  158 tacttccatgaagagctggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacg 257  Q
    |||||| |  ||| ||| ||||| |||||||||| |||||||  || |||||||  ||| || ||||||||||||||||||||||||||| ||| |  ||    
T  6260157 tacttcgacaaagggcttgtgaataaacttgaaaccacactgaattttatcaatctagtactagatgacgcagagacaaagcagtacgaggatctaggcg 6260058  T
Q  258 tgaagaattgggttgatgatgt 279  Q
    |||||  |||| ||||||||||    
T  6260057 tgaagtgttggcttgatgatgt 6260036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 94 - 278
Target Start/End: Complemental strand, 6266740 - 6266556
Alignment:
Q  94 ggcatttctttcccctgtgattcgattgatttgtgagagtttagcttcaacagatttcagagaatacttccatgaagagctggtgaaaaaacttgaaatc 193  Q
    |||||||||||||||| | || | |  |||||||||||| ||| |||||||||||||| |||  ||| ||| ||||||||||| ||||||||||||||||    
T  6266740 ggcatttctttcccctatcatccaagagatttgtgagaggttatcttcaacagatttcggaggctacgtccgtgaagagctggggaaaaaacttgaaatc 6266641  T
Q  194 acactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacgtgaagaattgggttgatgatg 278  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6266640 acactggtttctatcaatcaagtgctggatgacgcagagacaaagaagtacgagaatcaaaacgtgaagaattgggttgatgatg 6266556  T

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Target: chr3; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 66 - 277
Target Start/End: Complemental strand, 6169986 - 6169775
Alignment:
Q  66 atatcatggaagaggttattcatggtggggcatttctttcccctgtgattcgattgatttgtgagagtttagcttcaacagatttcagagaatacttcca 165  Q
    ||||||||| ||||||| ||  | || |||||||||||||||| || |||| ||||||||||||||| ||||||||||||||||| || || ||||||||    
T  6169986 atatcatggcagaggttgttgttcgtcgggcatttctttcccccgtcattcaattgatttgtgagagattagcttcaacagatttgagtgactacttcca 6169887  T
Q  166 tgaagagctggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacgtgaagaat 265  Q
    |||| |||  ||||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||||||| |||| | |||| ||||||    
T  6169886 tgaaaagcatgtgaaaaaacttgaaatcacattggtttcaatcaataaagtgcttgatgacgcagagacaaagcagtacgaaaatctagacgtaaagaat 6169787  T
Q  266 tgggttgatgat 277  Q
    ||||||||||||    
T  6169786 tgggttgatgat 6169775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 66 - 279
Target Start/End: Complemental strand, 6143396 - 6143183
Alignment:
Q  66 atatcatggaagaggttattcatggtggggcatttctttcccctgtgattcgattgatttgtgagagtttagcttcaacagatttcagagaatacttcca 165  Q
    ||||||||| |||||||  |  |||| ||||||||||||||||||| |||| ||||||||||||||  ||| ||||||||||||||||||| || |||||    
T  6143396 atatcatggcagaggttgatgttggtagggcatttctttcccctgtcattcaattgatttgtgagaagttaacttcaacagatttcagagactatttcca 6143297  T
Q  166 tgaagagctggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacgtgaagaat 265  Q
    ||||| |||||||||||||||||||||||||||    ||||||||| | |||||||||||| ||||||||||||||||| | ||||||| ||||||||||    
T  6143296 tgaagggctggtgaaaaaacttgaaatcacactcaagtctatcaattatgtgctggatgacacagagacaaagcagtaccaaaatcaaaccgtgaagaat 6143197  T
Q  266 tgggttgatgatgt 279  Q
    ||| ||||||||||    
T  6143196 tggcttgatgatgt 6143183  T

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Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 94 - 280
Target Start/End: Original strand, 13269572 - 13269758
Alignment:
Q  94 ggcatttctttcccctgtgattcgattgatttgtgagagtttagcttcaacagatttcagagaatacttccatgaagagctggtgaaaaaacttgaaatc 193  Q
    |||||||||||||||| | |||| ||||||||||||||  ||| |||||||| |||||||||| || |||||||||| ||||||||||||||||||||||    
T  13269572 ggcatttctttcccctatcattcaattgatttgtgagaaattaacttcaacatatttcagagactatttccatgaagggctggtgaaaaaacttgaaatc 13269671  T
Q  194 acactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacgtgaagaattgggttgatgatgtc 280  Q
    ||||||   ||||||||| |  ||||||||||||||||||| ||||||||| | ||||||  |||| |||||||| |||||||||||    
T  13269672 acactgaagtctatcaattatttgctggatgacgcagagactaagcagtaccaaaatcaacgcgtggagaattggcttgatgatgtc 13269758  T

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Target: chr3; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 44 - 263
Target Start/End: Complemental strand, 6238767 - 6238547
Alignment:
Q  44 ttttgtttgtgttcaat-aatgaatatcatggaagaggttattcatggtggggcatttctttcccctgtgattcgattgatttgtgagagtttagcttca 142  Q
    |||||||| |||||||| |||  ||||||||| ||||||| ||  ||||  |||||||||||||||| | |||| |||||||| |||||| |||||||||    
T  6238767 ttttgtttttgttcaattaattgatatcatggcagaggttgttgttggtcaggcatttctttcccctatcattcaattgatttatgagaggttagcttca 6238668  T
Q  143 acagatttcagagaatacttccatgaagagctggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagt 242  Q
    |||||||||||||| |||||  |||| | ||| ||||||||||||||||||||||||   ||||||||| ||||||||||||||| ||||||| || |||    
T  6238667 acagatttcagagactacttgaatgatgggctagtgaaaaaacttgaaatcacactgaagtctatcaataaagtgctggatgacgaagagacagagtagt 6238568  T
Q  243 acgagaatcaaaacgtgaaga 263  Q
    ||||||| | | |||||||||    
T  6238567 acgagaaactagacgtgaaga 6238547  T

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Target: chr3; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 6901134 - 6900978
Alignment:
Q  88 tggtggggcatttctttcccctgtgattcgattgatttgtgagagtttagcttcaacagatttcagagaatacttccatgaagagctggtgaaaaaactt 187  Q
    ||||||| ||||||||||  ||||  ||||| |||||| |||||| |||||||||||||||| |||||| ||| |||||| |||  ||| ||||||||||    
T  6901134 tggtgggacatttctttcgtctgtctttcgagtgatttttgagaggttagcttcaacagattgcagagattacgtccatgtagatgtggagaaaaaactt 6901035  T
Q  188 gaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtac 244  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||    
T  6901034 gaaatcacactggtttctatcaataaagtgctggatgacgcaaaggcaaagcagtac 6900978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 7751156 - 7750967
Alignment:
Q  88 tggtggggcatttctttcccctgtgattcgattgatttgtgagagtttagcttcaacagatttcagagaatacttccatgaagagctggtgaaaaaactt 187  Q
    ||||||||||||||||||  ||||  ||| | ||||| | ||||| || |||||   |||||||||||| ||||||||||||  ||||  ||||||||||    
T  7751156 tggtggggcatttctttcgtctgtctttcaagtgattcgagagaggttggcttctcaagatttcagagactacttccatgaaaggctgtggaaaaaactt 7751057  T
Q  188 gaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacgtgaagaattgggttgatgat 277  Q
    ||||||||||| | ||||||||||||||| |||||||| ||||| | |||| ||||| |  | | |||||||||||||||| ||||||||    
T  7751056 gaaatcacactagattctatcaatgaagtactggatgatgcagatataaaggagtaccaacaccgaaacgtgaagaattggcttgatgat 7750967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 6590327 - 6590467
Alignment:
Q  91 tggggcatttctttcccctgtgattcgattgatttgtgagagtttagcttcaacagatttcagagaatacttccatgaagagctggtgaaaaaacttgaa 190  Q
    |||||||||||||||  ||||  ||  | ||||| ||||||  || ||||| | |||||||||| | ||||||||||||  ||||  |||||||||||||    
T  6590327 tggggcatttctttcgtctgtctttttagtgattcgtgagaagttggcttctagagatttcagaaactacttccatgaaatgctgcggaaaaaacttgaa 6590426  T
Q  191 atcacactggtttctatcaatgaagtgctggatgacgcaga 231  Q
    |||||||||| ||||||||||||||| |||||||| |||||    
T  6590427 atcacactggattctatcaatgaagtactggatgaagcaga 6590467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 6918118 - 6917988
Alignment:
Q  147 atttcagagaatacttccatgaagagctggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacga 246  Q
    |||||||||| |||||| |||| | | |||| ||||   ||||||||||| ||| |||||||||||||||||| ||||| ||||||  |||||||||| |    
T  6918118 atttcagagactacttcgatgatgggttggttaaaatttttgaaatcacattggattctatcaatgaagtgcttgatgatgcagaggtaaagcagtacca 6918019  T
Q  247 gaatcaaaacgtgaagaattgggttgatgat 277  Q
     || | | |||||||||||||| ||||||||    
T  6918018 aaaccgagacgtgaagaattggcttgatgat 6917988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 6849828 - 6849905
Alignment:
Q  165 atgaagagctggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagt 242  Q
    |||||| |||| |||||||||||||||||| ||||  |||||||||||||| ||||||||  ||||||||||||||||    
T  6849828 atgaagggctgctgaaaaaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaagcagt 6849905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 274
Target Start/End: Complemental strand, 8472535 - 8472435
Alignment:
Q  174 tggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacgtgaagaattgggttga 273  Q
    |||| |||||||| ||||||||| ||  |||||||||| || || ||||||| |||||||||||| ||||| |||| ||||| || ||||||||| ||||    
T  8472535 tggttaaaaaactcgaaatcacattgaattctatcaatcaattgttggatgatgcagagacaaagaagtaccagaaccaaaatgttaagaattggcttga 8472436  T
Q  274 t 274  Q
    |    
T  8472435 t 8472435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 6721014 - 6721086
Alignment:
Q  172 gctggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtac 244  Q
    |||| |||||| |||||||||| ||||||||||||| ||  ||||| ||||||||||||| |||  |||||||    
T  6721014 gctgatgaaaagacttgaaatcgcactggtttctattaaaaaagtgatggatgacgcagatacattgcagtac 6721086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 6837946 - 6838038
Alignment:
Q  182 aaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacgtgaagaattgggttgat 274  Q
    ||||||||| ||||||||  ||||||| || || || || |||| |||||||||||| ||||| | || ||||| |||||||| ||| |||||    
T  6837946 aaacttgaagtcacactgaattctatcgatcaattgttgaatgatgcagagacaaagaagtaccaaaaccaaaatgtgaagaagtggtttgat 6838038  T

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Target: scaffold0425 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 12936 - 13013
Alignment:
Q  165 atgaagagctggtgaaaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagt 242  Q
    |||||| |||| |||||||||||||||||| ||||  |||||||||||||| ||||||||  ||||||||||||||||    
T  12936 atgaagggctgctgaaaaaacttgaaatcaaactgaattctatcaatgaagagctggatgttgcagagacaaagcagt 13013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 6572356 - 6572450
Alignment:
Q  180 aaaaacttgaaatcacactggtttctatcaatgaagtgctggatgacgcagagacaaagcagtacgagaatcaaaacgtgaagaattgggttgat 274  Q
    ||||||||||||||||| ||  |||||||||| || || ||||||| ||||||||||| |||||| | || | ||||||||||| |||| |||||    
T  6572356 aaaaacttgaaatcacaatgaattctatcaatcaattgttggatgatgcagagacaaaacagtaccaaaacccaaacgtgaagatttggcttgat 6572450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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