View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_3 (Length: 829)
Name: NF15376_low_3
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 435 - 792
Target Start/End: Complemental strand, 28296444 - 28296087
Alignment:
| Q |
435 |
gttgaaaaggaaaggagcttttgtgaattaagtaaaataatatacgtgttgatgtgtagacatatgcgacggtaaggagtggatctatagctattgcagc |
534 |
Q |
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| T |
28296444 |
gttgaaaaggaaaagagcttttgtgaattaagtaaaataatatacgtgttgatgtgtagacatatgcgacggtaaggagtggatctatagctattgcagc |
28296345 |
T |
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| Q |
535 |
atcaactttggattctctgcttgatctaatggctggtggtatactttggtacactcacatagcaatgaagaacataaatatctatcagtatcccatcgga |
634 |
Q |
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| T |
28296344 |
atcaactttggattctctgcttgatctaatggctggtggtatactttggtacactcacatagcaatgaagaacataaatatctatcagtatcccatcgga |
28296245 |
T |
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| Q |
635 |
aagctgagggtgcagccagtaggcataattgtttttgctgctgtcatggccacacttggtgagtcaaatttgacttgaactatattcctagcccctatgt |
734 |
Q |
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| T |
28296244 |
aagctgagggtgcagccagtaggcataattgtttttgctgctgtcatggccacacttggtgagtcaaatttgacttgaactatattcccagcccctatgt |
28296145 |
T |
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| Q |
735 |
tgttcatacaaaattttgaacaaattttgaaatcaatttctaaactgtatggtccttc |
792 |
Q |
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| T |
28296144 |
tgttcatacaaaattttgaacaaattttgaaatcaatttctaaactgtatagtccttc |
28296087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 28296879 - 28296541
Alignment:
| Q |
16 |
atttatgtattaaatttcaagtttgcagtcgtcagattcatatgtttggattcaataaacagttattgtacatattaactgattttcaaaaaagtgattt |
115 |
Q |
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| T |
28296879 |
atttatgtattaaatttcaagtttgcagtcgtcagattcatatgtttggattcaataaacagttattgtacatactaactgattttcaaaaaagtgattt |
28296780 |
T |
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| Q |
116 |
tg-----------------tattgattcgcttgcaattgagtataaagtttattgatttctgtttggtattttcactcaaaaagcaatttttgatgtaaa |
198 |
Q |
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| T |
28296779 |
tgaatttaatttgattttgtattgattcgcttacaattgagtataaagtttattgatttctgtttggtattttcactcaaaaagcaatttt-gatgtaaa |
28296681 |
T |
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| Q |
199 |
gtttgacataaaatttagtgttaactttttgacataggacaaaagctaccttttgtcacttttcagtttaactaaagtttggaagcaaaattaattttat |
298 |
Q |
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| T |
28296680 |
gtttgacataaaatttagtgttaactttttgacataggacaaaagctaccttttgtcacttttcagtttaactaaagtttggaagcaaaattaattttat |
28296581 |
T |
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| Q |
299 |
gcaattgaggttatagaatagttcatttttaaactagaac |
338 |
Q |
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| T |
28296580 |
gtaattgaggttatagaatggttcatttttaaactagaac |
28296541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 465 - 720
Target Start/End: Original strand, 36991115 - 36991368
Alignment:
| Q |
465 |
agtaaaataatatacgtgttgatgtgtagacatatgcgacggtaaggagtggatctatagctattgcagcatcaactttggattctctgcttgatctaat |
564 |
Q |
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|||||||||||| | |||||||||| ||||| ||||||| ||||||||||| || ||| ||||| ||||| ||||||| ||| |||| ||||||||||| |
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| T |
36991115 |
agtaaaataatacaagtgttgatgtatagacttatgcgaaagtaaggagtgggtcaataactattacagcaccaactttagat-ctctacttgatctaat |
36991213 |
T |
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| Q |
565 |
ggctggtggtatactttggtacactcacatagcaatgaagaacataaatatctatcagtatcccatcggaaagctgagggtgcagccagtaggcataatt |
664 |
Q |
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||||||| |||||||||||||||| ||| || ||||||||||||| |||||||| || |||||||| | ||| |||||||||||||| |||||| ||||| |
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| T |
36991214 |
ggctggtagtatactttggtacacccacgtaacaatgaagaacatgaatatctaccaatatcccattgaaaaactgagggtgcagccggtaggcctaatt |
36991313 |
T |
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| Q |
665 |
gtttttgctgctgtcatggccacacttggtgagtcaaatttgacttgaactatatt |
720 |
Q |
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|| | |||||| ||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
36991314 |
gtcgcttttgctgtgatggccacacttggtgagtcata-ttgacttaaactatatt |
36991368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 465 - 720
Target Start/End: Original strand, 37016555 - 37016808
Alignment:
| Q |
465 |
agtaaaataatatacgtgttgatgtgtagacatatgcgacggtaaggagtggatctatagctattgcagcatcaactttggattctctgcttgatctaat |
564 |
Q |
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|||||||||||| | |||||||||| ||||| ||||||| ||||||||||| || ||| ||||| ||||| ||||||| ||| |||| ||||||||||| |
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| T |
37016555 |
agtaaaataatacaagtgttgatgtatagacttatgcgaaagtaaggagtgggtcaataactattacagcaccaactttagat-ctctacttgatctaat |
37016653 |
T |
|
| Q |
565 |
ggctggtggtatactttggtacactcacatagcaatgaagaacataaatatctatcagtatcccatcggaaagctgagggtgcagccagtaggcataatt |
664 |
Q |
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||||||| |||||||||||||||| ||| || ||||||||||||| |||||||| || |||||||| | ||| |||||||||||||| |||||| ||||| |
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| T |
37016654 |
ggctggtagtatactttggtacacccacgtaacaatgaagaacatgaatatctaccaatatcccattgaaaaactgagggtgcagccggtaggcctaatt |
37016753 |
T |
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| Q |
665 |
gtttttgctgctgtcatggccacacttggtgagtcaaatttgacttgaactatatt |
720 |
Q |
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|| | |||||| ||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
37016754 |
gtcgcttttgctgtgatggccacacttggtgagtcata-ttgacttaaactatatt |
37016808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 509 - 695
Target Start/End: Complemental strand, 32207329 - 32207143
Alignment:
| Q |
509 |
aggagtggatctatagctattgcagcatcaactttggattctctgcttgatctaatggctggtggtatactttggtacactcacatagcaatgaagaaca |
608 |
Q |
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|||| ||||||||| |||||||| || ||||| ||||||||||||||||| | ||||| ||||| |||||||||| ||||||||| ||||||||| | |
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| T |
32207329 |
aggactggatctatggctattgctgcttcaacattggattctctgcttgacttcatggccggtggcatactttggttcactcacatgtcaatgaagaccg |
32207230 |
T |
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| Q |
609 |
taaatatctatcagtatcccatcggaaagctgagggtgcagccagtaggcataattgtttttgctgctgtcatggccacacttggtg |
695 |
Q |
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||||||| || | || || || ||||||||||| |||| || ||||| |||||| | ||||| ||||| ||||| |||||||||| |
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| T |
32207229 |
taaatatgtacaaataccctattggaaagctgagaatgcaacctgtaggaataattatctttgcagctgttatggcaacacttggtg |
32207143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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