View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_4 (Length: 739)
Name: NF15376_low_4
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 43220219 - 43219848
Alignment:
| Q |
14 |
attattctggtgataggtgcaagaaagaatgagaatagagaaaaacttagaagtttgaaatttttactagtattttgcaatgagnnnnnnnaattaataa |
113 |
Q |
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| T |
43220219 |
attattctggtgatgggtgcaagaaagaatgagaatagagaaaaacttagaagtttgaaatttttactagtattttgcaatgagtttttttaattaataa |
43220120 |
T |
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| Q |
114 |
gcggtactaatggtcgttttacaattgcacaatgcgtttcaattttactattacgcaatgtgtttcacttgcttccatatacaaggaagtaacnnnnnnn |
213 |
Q |
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| T |
43220119 |
gcggtactaatggtcgttttacaattgcacaatgcgtttcaattttactattacgcaatgtgtttcacttgcttccatatacaatggagtaacctttttt |
43220020 |
T |
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| Q |
214 |
ggcagtaactatttcaaaaatattttagtcatactcttgtctttaagtttattaaattatccttttactctttatagggccttttataagg-----atgt |
308 |
Q |
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| T |
43220019 |
ggcagtaactatttcaaaaatattttagtcatactcttgt-------gttattaaattatccttttactctttctagggccttttataaggatgtcatgt |
43219927 |
T |
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| Q |
309 |
cattttatcaagtgcaactagggtaacttttgttctgcacaagtagacaacagtcctttgcagcttttgataaaaagag |
387 |
Q |
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| T |
43219926 |
cattttatcaagtgcaactagggtaacttttgttctacacaagtagacaacagttctttgcagcttttgataaaaagag |
43219848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 491 - 720
Target Start/End: Complemental strand, 43219741 - 43219523
Alignment:
| Q |
491 |
ttaattagaaacatgatcaaagtggtaataattgctcagtatttttgcaaatgtatctgcaatttcataacaagtgttgttttcttgatatatttgtttc |
590 |
Q |
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| T |
43219741 |
ttaattagaaacatgatcaaagtggtaataattgctcagtatttttgcaaatgtatctgtaatttcataacaagtgttgttttcttgatatatttgtttc |
43219642 |
T |
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| Q |
591 |
ttcttctatttaggtcctcatgtgttgtgcctctttaatgaccttcactttgtttatgttttcacttttgtattgaatttaattgtatttgattttgtaa |
690 |
Q |
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| T |
43219641 |
ttcttctatttaggtcctcatgtg---------tttaatgaccttcactttgtttatgttttcacttttgtattgaatttaattgtatttgattttgtaa |
43219551 |
T |
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| Q |
691 |
ttcttaccatcatttgttcatagtaaaatt |
720 |
Q |
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| T |
43219550 |
ttc--accatcatttgttcatagtaaaatt |
43219523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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