View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_6 (Length: 564)
Name: NF15376_low_6
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 34761225 - 34761676
Alignment:
| Q |
1 |
ggatcaaccgtacagtttaatagaatagggaatctttttgaaatattaatctcaagggtctatttgagagggtgctacaaagttaacgactaatttggtg |
100 |
Q |
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| T |
34761225 |
ggatcaaccgtacagtttaatagaatagggaatctttttgaaatatcaatctcaagggtctatttgagagcttactacaaagtcaacgactaatttggtg |
34761324 |
T |
|
| Q |
101 |
attgtacttgtctagtcgactaatattattcaaaacagggaactgcactataaaaacaatagaaaagtgcaaagcaggttattgatcactcgaacttatt |
200 |
Q |
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| T |
34761325 |
attgtacttgtttagtcgactaatattattcaaaacagggaactgcactataaaaacaatagaaaagtgcaaagcaggttattgatcactcgaacttatt |
34761424 |
T |
|
| Q |
201 |
attacagaaacaaattgattcataataacagacaaacaaaatcaaataatctatgaacttggttaattttgattagttgcttgatgaagaag-nnnnnnn |
299 |
Q |
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| T |
34761425 |
attacagaaacaaattgattcataataacagacaaaaaaaatcaaataatctatgaacttagttaattttgattagttgcttgatgaagaagaaaaaaaa |
34761524 |
T |
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| Q |
300 |
ncttacaaatagtatggatgaagtatatcggaatactgatgcagtagccaccaaccaggcgcgaaatccaaccagaaagaagtgagaaccctacagttaa |
399 |
Q |
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| T |
34761525 |
acttacaaatagtatggatgaagtatatcggaatactgatgcagtagccaccaaccaggcgcgaaatccaaccagaaagaagtgagaaccctacagttaa |
34761624 |
T |
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| Q |
400 |
ttgtgttaggtggagtatatttcaagtccaaatctttaatatttgaaccatac |
452 |
Q |
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| T |
34761625 |
ttgtg-taggtggagtatatttcaagtccaaatctttaatatttgaaccatac |
34761676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 543
Target Start/End: Original strand, 34761737 - 34761767
Alignment:
| Q |
513 |
gggcttttaagaaatttcaattttcaaccca |
543 |
Q |
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| T |
34761737 |
gggcttttaagaaatttcaattttcaaccca |
34761767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 6556518 - 6556467
Alignment:
| Q |
47 |
taatctcaagggtctatttgagagggtgctacaaagttaacgactaatttgg |
98 |
Q |
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|||||||| ||||||||||||||| || || ||||||||| ||||||||||| |
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| T |
6556518 |
taatctcaggggtctatttgagagtgtcctgcaaagttaaagactaatttgg |
6556467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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