View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_7 (Length: 562)
Name: NF15376_low_7
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 44787454 - 44788013
Alignment:
| Q |
1 |
agggaaagaaattatcattgttcataattaaatgacaataaatgtttgttacttcacttccaaatttcgaaatgggattaattactatgtatgtaaagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44787454 |
agggaaagaaattatcattgttcataattaaatgacaataaatgtttattacttcacttccaaatttcgaaatgggatta----ctatgtatgtaaagct |
44787549 |
T |
|
| Q |
101 |
tcttctaataataaaattaatgggatataaagtttt-cttttaaaaagaacaaatactataaagttgaacaatcttcttaaaaatagttaaacaaacaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
44787550 |
tcttctaataataaaattaatgggatataaagtttttcttttaaaaagaacaaatactataaagttgaacaatcttcttaaaaataattaaacaaacaaa |
44787649 |
T |
|
| Q |
200 |
aatttactagtaacgggaacatatttggtataacgcccctagcnnnnnnnttgatcagtctatatgttagtagtttctctctctttgaaccagtcattta |
299 |
Q |
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| T |
44787650 |
a-tttactagtaacgggaacatatttggtataacgcccctagcaaaaaaattgatcagtctatatgttagtagtttctctctctttgaaccagtccttta |
44787748 |
T |
|
| Q |
300 |
atttcttcaattcttttaactctacctcaaatcagttgaacaactccatccccttaaaatgctgaatcaactaa-----------actaaatcattgaat |
388 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| || || | ||||||| |
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| T |
44787749 |
atttcttcaattcttttaactctacctcaaattagttgaaccactcaatccccttaaaatgctgaatcaactaatttcacattttacaaagttattgaat |
44787848 |
T |
|
| Q |
389 |
gtaatagcaaacgtaattgatgtttataataaaccttgaatgaaatgtaaggttacaaataaaacaactaaactaaatcattgcaatgagacaagttaaa |
488 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44787849 |
gtaatagcaaacgtaattgatgtttataataaaccttgaatgaaatgtaaggttacaaataaaacaactaaactaaatcattgcaatgagacaagttaaa |
44787948 |
T |
|
| Q |
489 |
tgacaaagattcacatccttttacaactatttataatttatcaacaacacaattatgagaattat |
553 |
Q |
| |
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|
| T |
44787949 |
tgacaaagattcacatccttttacaactatttataatttatcaacaacacaattatgagaattat |
44788013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 537
Target Start/End: Complemental strand, 36681678 - 36681643
Alignment:
| Q |
502 |
catccttttacaactatttataatttatcaacaaca |
537 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
36681678 |
catccttttacaactatttataatttatcaagaaca |
36681643 |
T |
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