View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15376_low_8 (Length: 546)
Name: NF15376_low_8
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15376_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 23 - 536
Target Start/End: Original strand, 5530589 - 5531102
Alignment:
| Q |
23 |
gagtatgtaaaatattaatattagtacatgaaaatatgtttgattgcatttgaaataatagcacgttttgtttgttaggattattgtatgggaagatgga |
122 |
Q |
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| T |
5530589 |
gagtatgtaaaatattaatattagtacatgaaaatatgtttgattgcatttgaaataatagcacgttttgtttgttaggattattgtatgggaagatgga |
5530688 |
T |
|
| Q |
123 |
ttctgtgattttaatgaatgtgagcaaaggaagagtggatgcttgaatgaaagatttggagctgatgtattcttcaaaatgtctcatgaggtttatagtt |
222 |
Q |
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| T |
5530689 |
ttctgtgattttaatgaatgtgagcaaaggaagagtggatgcttgaatgaaagatttggagctgatgtattcttcaaaatgtctcatgaggtttatagtt |
5530788 |
T |
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| Q |
223 |
atggagaagggtaagagacaaaaacatttctcaacccttgcacattcttgccatgtttaagaaaataagattgtactatctttttagtgagacaaaaaag |
322 |
Q |
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| T |
5530789 |
atggagaagggtaagagacaaaaacatttctcaacccttgcacattcttgccatgtttaagaaaataagattgtactatctttttagtgagacaaaaaag |
5530888 |
T |
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| Q |
323 |
tttgttgtttgatgtatatattgcatataaatattatgcagattagtggggaaagttgcagcagataatggtcacaaatgggtttatagtgacactcaaa |
422 |
Q |
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| T |
5530889 |
tctgttgtttgatgtatatattgcatataaatattatgcagattagtggggaaagttgcagcagataatggtcacaaatgggtttatagtgacactcaaa |
5530988 |
T |
|
| Q |
423 |
atgggtgtgaagctaactatgttggtccatggaatgcttcaattgatcatgtaagggatgttgttttttgaaagaaataaaagcagaaagttttttatat |
522 |
Q |
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| T |
5530989 |
atgggtgtgaagctaactatgttggtccatggaatgcttcaattgatcatgtaagggatgttgttttttgaaagaaataaaagcagaaagtttttcatat |
5531088 |
T |
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| Q |
523 |
tttgtcctcctttg |
536 |
Q |
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| T |
5531089 |
tttgtcctcctttg |
5531102 |
T |
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