View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15376_low_9 (Length: 523)

Name: NF15376_low_9
Description: NF15376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15376_low_9
NF15376_low_9
[»] chr5 (11 HSPs)
chr5 (84-513)||(20473359-20473788)
chr5 (83-513)||(31375542-31375977)
chr5 (364-505)||(22035787-22035929)
chr5 (364-505)||(22039013-22039155)
chr5 (364-505)||(43103939-43104081)
chr5 (372-470)||(36700426-36700523)
chr5 (419-484)||(9421046-9421112)
chr5 (415-467)||(7290006-7290058)
chr5 (92-127)||(22036170-22036205)
chr5 (92-127)||(22039396-22039431)
chr5 (90-127)||(43103661-43103698)
[»] chr3 (22 HSPs)
chr3 (83-513)||(23048898-23049327)
chr3 (84-515)||(17544573-17545004)
chr3 (152-504)||(43683436-43683790)
chr3 (317-513)||(50096601-50096797)
chr3 (364-505)||(10558086-10558228)
chr3 (372-505)||(3164887-3165022)
chr3 (364-490)||(26272993-26273120)
chr3 (372-484)||(19193690-19193802)
chr3 (284-432)||(28716731-28716884)
chr3 (413-484)||(9237536-9237608)
chr3 (415-484)||(6731820-6731890)
chr3 (415-484)||(6765354-6765424)
chr3 (419-484)||(33672115-33672181)
chr3 (157-239)||(46542535-46542616)
chr3 (84-135)||(28716501-28716552)
chr3 (83-169)||(6765023-6765106)
chr3 (92-127)||(10557810-10557845)
chr3 (373-416)||(18549534-18549577)
chr3 (84-127)||(19194052-19194095)
chr3 (84-169)||(6732138-6732220)
chr3 (415-484)||(53189718-53189788)
chr3 (84-169)||(53190035-53190117)
[»] chr7 (20 HSPs)
chr7 (90-466)||(18973681-18974056)
chr7 (83-504)||(7570274-7570697)
chr7 (83-504)||(7576689-7577112)
chr7 (364-505)||(1636976-1637118)
chr7 (364-505)||(44673071-44673213)
chr7 (372-505)||(5189749-5189881)
chr7 (94-211)||(6374706-6374822)
chr7 (364-505)||(1633731-1633873)
chr7 (364-477)||(20436621-20436735)
chr7 (364-508)||(231691-231836)
chr7 (387-508)||(27059203-27059326)
chr7 (301-349)||(6374575-6374623)
chr7 (94-231)||(231939-232075)
chr7 (92-127)||(1636700-1636735)
chr7 (92-127)||(5189463-5189498)
chr7 (364-506)||(21659083-21659225)
chr7 (92-127)||(44672795-44672830)
chr7 (205-239)||(24918379-24918413)
chr7 (205-238)||(2090793-2090826)
chr7 (91-127)||(20436977-20437013)
[»] chr2 (19 HSPs)
chr2 (215-508)||(3252248-3252540)
chr2 (298-473)||(23258746-23258922)
chr2 (364-505)||(35076842-35076984)
chr2 (364-505)||(35080100-35080242)
chr2 (364-470)||(13613281-13613387)
chr2 (411-485)||(6277259-6277333)
chr2 (16-84)||(27188782-27188850)
chr2 (16-84)||(27838596-27838664)
chr2 (85-127)||(6276923-6276965)
chr2 (419-484)||(27195987-27196053)
chr2 (415-484)||(27499212-27499282)
chr2 (419-484)||(29445549-29445615)
chr2 (419-484)||(4696994-4697060)
chr2 (90-127)||(16881605-16881642)
chr2 (90-127)||(17039295-17039332)
chr2 (84-127)||(33749731-33749774)
chr2 (92-127)||(35077228-35077263)
chr2 (92-127)||(35080486-35080521)
chr2 (364-405)||(38027051-38027092)
[»] chr8 (16 HSPs)
chr8 (188-513)||(27805468-27805797)
chr8 (242-508)||(8855839-8856106)
chr8 (242-508)||(8857312-8857579)
chr8 (372-505)||(5952054-5952187)
chr8 (372-505)||(33383288-33383421)
chr8 (372-513)||(12104541-12104685)
chr8 (364-505)||(2847865-2848007)
chr8 (372-505)||(29354208-29354341)
chr8 (84-214)||(2847580-2847715)
chr8 (386-452)||(10648626-10648692)
chr8 (84-192)||(10649566-10649672)
chr8 (156-240)||(31467955-31468038)
chr8 (84-128)||(33383671-33383715)
chr8 (92-127)||(5952438-5952473)
chr8 (420-458)||(33578369-33578407)
chr8 (94-134)||(8855083-8855123)
[»] chr4 (17 HSPs)
chr4 (253-513)||(34855570-34855830)
chr4 (364-484)||(21614355-21614476)
chr4 (372-485)||(22884373-22884486)
chr4 (372-485)||(22936037-22936150)
chr4 (372-485)||(48961769-48961882)
chr4 (419-484)||(14617347-14617413)
chr4 (419-484)||(12194412-12194478)
chr4 (419-467)||(22755609-22755657)
chr4 (409-485)||(54899752-54899828)
chr4 (372-458)||(21557644-21557730)
chr4 (213-250)||(33493575-33493612)
chr4 (451-484)||(12705934-12705967)
chr4 (94-186)||(21557366-21557456)
chr4 (83-169)||(14617662-14617745)
chr4 (84-127)||(25186356-25186399)
chr4 (93-127)||(54900089-54900123)
chr4 (84-112)||(12194783-12194811)
[»] chr6 (8 HSPs)
chr6 (298-513)||(11184047-11184262)
chr6 (372-505)||(964687-964820)
chr6 (364-505)||(5190461-5190603)
chr6 (377-484)||(27315832-27315939)
chr6 (419-484)||(15394252-15394318)
chr6 (419-468)||(12489189-12489238)
chr6 (83-127)||(965071-965115)
chr6 (84-127)||(17733248-17733291)
[»] chr1 (18 HSPs)
chr1 (323-513)||(8435075-8435256)
chr1 (94-211)||(28957245-28957361)
chr1 (330-495)||(26639539-26639705)
chr1 (379-504)||(28957076-28957201)
chr1 (364-505)||(28138888-28139030)
chr1 (364-505)||(28142139-28142281)
chr1 (364-504)||(14159341-14159482)
chr1 (373-508)||(42590868-42591003)
chr1 (419-484)||(45532684-45532750)
chr1 (372-470)||(25663142-25663240)
chr1 (118-192)||(28411804-28411876)
chr1 (412-484)||(17761811-17761884)
chr1 (90-127)||(25662856-25662893)
chr1 (84-127)||(21911039-21911082)
chr1 (92-127)||(28138611-28138646)
chr1 (92-127)||(28141861-28141896)
chr1 (392-450)||(28412080-28412138)
chr1 (90-127)||(14159063-14159100)
[»] scaffold0086 (1 HSPs)
scaffold0086 (84-211)||(24170-24295)
[»] scaffold0050 (2 HSPs)
scaffold0050 (362-473)||(38720-38831)
scaffold0050 (154-205)||(38512-38563)
[»] scaffold0012 (2 HSPs)
scaffold0012 (372-505)||(157028-157161)
scaffold0012 (84-127)||(157409-157452)
[»] scaffold0005 (2 HSPs)
scaffold0005 (419-484)||(199964-200030)
scaffold0005 (83-169)||(199632-199715)
[»] scaffold0146 (1 HSPs)
scaffold0146 (372-470)||(35803-35901)
[»] scaffold0884 (1 HSPs)
scaffold0884 (83-127)||(4288-4332)


Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 84 - 513
Target Start/End: Original strand, 20473359 - 20473788
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaat 183  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||    
T  20473359 tgatagaaaattagcaagtgcactaatttatatcgaagtaataatttaattcatatccacagggactgt--tctaatctctacttagcaatttcattaat 20473456  T
Q  184 atttaggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatgtgtt 282  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20473457 atttaggatgtatgtaaatgggggttgccctaggcagttggtttgattgcataaaaagtaaataaatgactgaagaataaaatcggttttgagatgtgtt 20473556  T
Q  283 tagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaa 382  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  20473557 tagagaagggattaagtctttcgattcatccgtccatcgctcattagtaatctacatctaaatcatatgattgctattcagtttacgacaattaacaaaa 20473656  T
Q  383 tagctcagatcaatcccttgactcagag-ccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgtta 481  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  20473657 tagctcaggtcaatcccttgactcagagcccctcttttctaattataattccctaattccttaggtgaacctataatcatcaaaggttttaaatccgtta 20473756  T
Q  482 attttagaatcacagcataacaacttttcatc 513  Q
    |||||||||||||| | |||||||||| ||||    
T  20473757 attttagaatcacaacctaacaactttccatc 20473788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 83 - 513
Target Start/End: Complemental strand, 31375977 - 31375542
Alignment:
Q  83 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcat--- 179  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||  ||||||||||||||  || ||||||       
T  31375977 ctgatacaaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacaaggactgt--tctaatctctacttgacagtttcatcaa 31375880  T
Q  180 --taatatttaggatgtatgtaaatgggggttgcactaggcag-ttggttt-gattgca-taaaaagtaaataaatgatgaagaataaaatcggttttga 274  Q
      ||||||| ||||| ||||||||||||||||||  ||||||  ||||||| | ||||| | | || ||||||| |||  || |  ||| | ||||||||    
T  31375879 tataatattcaggatatatgtaaatgggggttgccttaggcaaattggttttggttgcaatgataaataaataactga--aaaatgaaacttggttttga 31375782  T
Q  275 gatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaat 374  Q
     || || | |||||| ||| || |||||| || |||||| | |||| |||||||||||||||||||||||| ||| || ||||||||| ||||||| |||    
T  31375781 aatatgatcagagaaaggactaggtcttttgaatcatctattcatcactcattagtaatctgcatctaaattataagactgttattcagtttacgataat 31375682  T
Q  375 taac-aaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaa 473  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  31375681 taaccaaaatagctcaggtaaatcccttgactcagagccctcttttctaattataattctctaattccttaggtgaacctataatcatcaaaggttttaa 31375582  T
Q  474 gtccgttaattttagaatcacagcataacaacttttcatc 513  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  31375581 gtccgttaattttagaatcacaacataacaactttccatc 31375542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 364 - 505
Target Start/End: Complemental strand, 22035929 - 22035787
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcaga-gccctcttttctaattataattccctaattccttaagtgaacctataatcat 461  Q
    |||||||||| |||||||||||||| || |||||||||||| ||| | |||||||||||| |||||||||||||||| ||||| ||||||||||| ||||    
T  22035929 tttacgacaaattaacaaaatagcttaggtcaatcccttga-tcataagccctcttttctgattataattccctaatcccttaggtgaacctatagtcat 22035831  T
Q  462 caaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    |||||||||||||||||||||||  || |||||| | |||||||    
T  22035830 caaaggttttaagtccgttaattcaagtatcacaacctaacaac 22035787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 364 - 505
Target Start/End: Complemental strand, 22039155 - 22039013
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcaga-gccctcttttctaattataattccctaattccttaagtgaacctataatcat 461  Q
    |||||||||| |||||||||||||| || |||||||||||| ||| | |||||||||||| |||||||||||||||| ||||| ||||||||||| ||||    
T  22039155 tttacgacaaattaacaaaatagcttaggtcaatcccttga-tcataagccctcttttctgattataattccctaatcccttaggtgaacctatagtcat 22039057  T
Q  462 caaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    |||||||||||||||||||||||  || |||||| | |||||||    
T  22039056 caaaggttttaagtccgttaattcaagtatcacaacctaacaac 22039013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 364 - 505
Target Start/End: Original strand, 43103939 - 43104081
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| ||||||||||| || || ||||||||||||  |  || |||||||||| |||||||||||||||| ||||| ||||||||||||||||     
T  43103939 tttacgacaaattaacaaaataacttaggtcaatcccttgatcctaagtcctcttttctgattataattccctaatcccttaggtgaacctataatcata 43104038  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||| || |||||| | |||||||    
T  43104039 aaaggttttaagtccgttaatttaagcatcacaacctaacaac 43104081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 470
Target Start/End: Complemental strand, 36700523 - 36700426
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttt 470  Q
    |||||||||||||||| || ||||||||||| |  | |||||||||| || |||||||||||||||||||| | ||||||||||| ||||  |||||||    
T  36700523 aattaacaaaatagcttaggtcaatcccttgtccta-agccctctttcctgattataattccctaattcctcaggtgaacctatattcattcaaggttt 36700426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 9421046 - 9421112
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||| ||||||||||||||||||| |||||||||||||  ||||||| | |||||||||||||||    
T  9421046 tctaatcataattccctaattccttaggtgaacctataattctcaaaggatattaagtccgttaatt 9421112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 7290058 - 7290006
Alignment:
Q  415 cttttctaattataattccctaattccttaagtgaacctataatcatcaaagg 467  Q
    |||||||||| ||||||||||||||||||| || ||||||||||  |||||||    
T  7290058 cttttctaatcataattccctaattccttaggtaaacctataattgtcaaagg 7290006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 22036205 - 22036170
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  22036205 aattagcaagtgtactaacttatatcgaagtaataa 22036170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 22039431 - 22039396
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  22039431 aattagcaagtgtactaacttatatcgaagtaataa 22039396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 43103661 - 43103698
Alignment:
Q  90 aaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  43103661 aaaattagcaattgtactaacttatatcgaagtaataa 43103698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 83 - 513
Target Start/End: Complemental strand, 23049327 - 23048898
Alignment:
Q  83 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaa 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |  ||||||||||||||||||||||||||||    
T  23049327 ctgatacaaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacagggactat--tctaatctctacttagcaatttcattaa 23049230  T
Q  183 tatttaggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatgtgt 281  Q
    ||||||||||||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  23049229 tatttaggatgtatgaaaatgggg-ttgccctagacagttggtttgattgcataaaaagtaaataaattactgaagaataaaatcggttttgagatgtgt 23049131  T
Q  282 ttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaa 381  Q
    |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||    
T  23049130 ttagagaagggaataagtctttcgattaatctgtccatcgcttattagtaatctgcatctaaatcatatgattgctattcagtttacgacaattaataaa 23049031  T
Q  382 atagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt-aagtccgtt 480  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||    
T  23049030 atagctcaggtcaatcccttgactcagagccctcttttctaattataattccctaattccttaggtgaacctataatcatcaaaggttttaaaatccgtt 23048931  T
Q  481 aattttagaatcacagcataacaacttttcatc 513  Q
    ||||||||||||||| | |||||||||| ||||    
T  23048930 aattttagaatcacaacctaacaactttccatc 23048898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 84 - 515
Target Start/End: Original strand, 17544573 - 17545004
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaat 183  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||  || |||||||||||  ||||||||| |||    
T  17544573 tgatacaaaattagcaagtgtactaatttatatcgaagtaataatttaatttgtatccacaaggactgt--tccaatctctacttgacaatttcatcaat 17544670  T
Q  184 atttaggatgtatgtaaatgggggttgcactaggcag-ttggttt-gattgca-taaaaagtaaataaatgatgaagaataaaatcggttttgagatgtg 280  Q
    ||| ||||||||||||||||||||||||  ||||||  ||||||| | ||||| | | || |||||||||||  || |  ||| | |||||||| || ||    
T  17544671 attcaggatgtatgtaaatgggggttgccttaggcaaattggttttggttgcaatgataaataaataaatga--aaaatgaaacttggttttgaaatatg 17544768  T
Q  281 tttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaac-a 379  Q
     |||||||| ||| || |||||| || |||||| | |||| |||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| |    
T  17544769 attagagaaaggactaggtcttttgaatcatctattcatcactcattagtaatctgcatctaaattatatgactgttattcagtttacgacaattaacca 17544868  T
Q  380 aaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgt 479  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17544869 aaatagctcaggtcaatcccttgacttagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgt 17544968  T
Q  480 taattttagaatcacagcataacaacttttcatctc 515  Q
    |||||||||||||||| |||||||||||| ||||||    
T  17544969 taattttagaatcacaacataacaactttccatctc 17545004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 152 - 504
Target Start/End: Complemental strand, 43683790 - 43683436
Alignment:
Q  152 tgttctaatctctacttagcaatttcattaatatttaggatgtatgtaaat-gggggttgcacta-ggcagttgg--tttgattgcataaaaagtaaata 247  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||  || ||||  | |  ||||||||||   |   ||||||    
T  43683790 tgttctaatctctacttagcaattttattaatatttaggatgtatgtaaatagggggttgccttaaggcaaattgattttgattgcaatga---taaata 43683694  T
Q  248 aatga-tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatc 346  Q
    ||| | |||| |||||| | |||||||| ||  | | |  |||  |||||  |||||||| |||||| ||||| |||||||| ||||||||| |||||||    
T  43683693 aataactgaaaaataaacttggttttgaaatacgataaacgaaaagattagatctttcgaatcatctatccattgctcattattaatctgcacctaaatc 43683594  T
Q  347 atatgattgttattcaatttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaag 446  Q
    |||  | || |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||||||||||||||| |    
T  43683593 atacaaatgctattcaatttacgataattaacaaaatagctcaggtcaatcccttgactcagaggcctcttctctgattataattccctaattccttagg 43683494  T
Q  447 tgaacctataatcatcaaaggttttaagtccgttaattttagaatcacagcataacaa 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  43683493 tgaacctataatcatcaaaggttttaagtccgttaattttagaatcacaacctaacaa 43683436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 317 - 513
Target Start/End: Complemental strand, 50096797 - 50096601
Alignment:
Q  317 catcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctct 416  Q
    |||| ||| ||||||||||||| ||||||| ||||| ||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||| |    
T  50096797 catcactcgttagtaatctgcacctaaatcgtatgactgttattcagtttacaacaattaacaaaatagttcaggtcaatcccttgactcagagccctat 50096698  T
Q  417 tttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgttaattttagaatcacagcataacaacttttcatc 513  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || | |||||||||| ||||    
T  50096697 tttctaattataattccctaattccttaggtgaacctataatcatcaaaggttttaagtccgttaattttataatcgcaacctaacaactttccatc 50096601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 505
Target Start/End: Original strand, 10558086 - 10558228
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  10558086 tttacgacaaattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctatagtcatc 10558185  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||  || |||||| | |||||||    
T  10558186 aaaggttttaagtccgttaattcaagtatcacaacctaacaac 10558228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 372 - 505
Target Start/End: Original strand, 3164887 - 3165022
Alignment:
Q  372 aattaacaaa--atagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtt 469  Q
    ||||||||||  |||||| || |||||||||||||||| | ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||    
T  3164887 aattaacaaattatagcttaggtcaatcccttgactcaaaaccctcttttctgattataattccctaattccttaggtgaacctatattcatcaaagctt 3164986  T
Q  470 ttaagtccgttaattttagaatcacagcataacaac 505  Q
    |||||| ||||||||||||  ||||| | |||||||    
T  3164987 ttaagtacgttaattttagtttcacaacctaacaac 3165022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 364 - 490
Target Start/End: Complemental strand, 26273120 - 26272993
Alignment:
Q  364 tttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatca 463  Q
    ||||||| |||||||||||||| |||| |||||| ||||||||||| |||||||||||||||| |||| ||||||  || | |||||||  |||||||||    
T  26273120 tttacgataattaacaaaatagttcaggtcaatcacttgactcagaaccctcttttctaattacaatttcctaatctctcatgtgaacccgtaatcatca 26273021  T
Q  464 aaggttttaa-gtccgttaattttagaa 490  Q
    ||||||| || |||||||||||| ||||    
T  26273020 aaggtttgaatgtccgttaatttaagaa 26272993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 372 - 484
Target Start/End: Complemental strand, 19193802 - 19193690
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||  |  ||| ||||||||| ||||||||||| ||||  |||| | |||||||||||||| |||||||||    
T  19193802 aattaacaaaatagcttaggtcaatcccttgatcctaagcactcttttctgattataattccataatctcttaggcgaacctataatcatgaaaggtttt 19193703  T
Q  472 aagtccgttaatt 484  Q
    |||||||||||||    
T  19193702 aagtccgttaatt 19193690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 432
Target Start/End: Original strand, 28716731 - 28716884
Alignment:
Q  284 agagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgat-tgttattcaatttacgacaattaacaaaa 382  Q
    |||||| |||| | |||||||||||||||| | |||| |||||||||||||||| | |||||| ||  |  |  |||  | |||| ||||||||||||||    
T  28716731 agagaaaggatcaggtctttcgattcatctattcatcactcattagtaatctgcttataaatcctacaaaatactatatagtttaggacaattaacaaaa 28716830  T
Q  383 tagctcagatcaatcccttgactcagagcc----ctcttttctaattataattc 432  Q
    |||||||| ||||||||||||| |||||||    |||||||| |||||||||||    
T  28716831 tagctcaggtcaatcccttgacccagagccctagctcttttccaattataattc 28716884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 413 - 484
Target Start/End: Complemental strand, 9237608 - 9237536
Alignment:
Q  413 ctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtt-ttaagtccgttaatt 484  Q
    ||||| |||||  |||||||| |||||||||| |||||||||||||||||||||||| |||||| ||||||||    
T  9237608 ctcttatctaaccataattccataattccttaggtgaacctataatcatcaaaggttattaagttcgttaatt 9237536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 6731890 - 6731820
Alignment:
Q  415 cttttctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||  ||||||| | |||||||||||||||    
T  6731890 cttttctaatcataattccctaatcccttaggtgaacctataattgtcaaaggatattaagtccgttaatt 6731820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 484
Target Start/End: Original strand, 6765354 - 6765424
Alignment:
Q  415 cttttctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||  ||||||| | |||||||||||||||    
T  6765354 cttttctaatcataattccctaatcccttaggtgaacctataattgtcaaaggatattaagtccgttaatt 6765424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 33672181 - 33672115
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||| ||||||||||||||||||| |||||||||||||  ||||||| | |||||||||||||||    
T  33672181 tctaatcataattccctaattccttaggtgaacctataattctcaaaggatattaagtccgttaatt 33672115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 46542616 - 46542535
Alignment:
Q  157 taatctctacttagcaatttcattaatatttaggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaa 239  Q
    |||| |||| ||||||||||||||||| |  | ||||||| ||||| |||||||| |||||||||||||||| ||||||||||    
T  46542616 taatttctatttagcaatttcattaatgtaaaagatgtat-taaattggggttgccctaggcagttggtttgtttgcataaaa 46542535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 28716501 - 28716552
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattc 135  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  28716501 tgatacaaaattagcaaatgtactaatttatgtcgaagtaataatataattc 28716552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 6765023 - 6765106
Alignment:
Q  83 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 169  Q
    |||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  6765023 ctgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 6765106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 10557810 - 10557845
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  10557810 aattagcaagtgtactaacttatatcgaagtaataa 10557845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 18549577 - 18549534
Alignment:
Q  373 attaacaaaatagctcagatcaatcccttgactcagagccctct 416  Q
    |||||||||||||||  |||||||| ||||||||||||||||||    
T  18549577 attaacaaaatagctttgatcaatctcttgactcagagccctct 18549534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 19194095 - 19194052
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  19194095 tgatagaaaatttgcaagtgtactaacttatatcgaagtaataa 19194052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 6732220 - 6732138
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 169  Q
    ||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  6732220 tgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 6732138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 53189788 - 53189718
Alignment:
Q  415 cttttctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||||||| ||||||||||||| ||||| ||||||||| |||   |||||| | |||||||||||||||    
T  53189788 cttttctaatcataattccctaatcccttaggtgaacctacaattgacaaaggatattaagtccgttaatt 53189718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 53190117 - 53190035
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 169  Q
    ||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  53190117 tgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 53190035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 90 - 466
Target Start/End: Original strand, 18973681 - 18974056
Alignment:
Q  90 aaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttag 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  18973681 aaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacagggactgt--tctaatctctacttagcaatttcattaatatttag 18973778  T
Q  190 gatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatgtgtttagaga 288  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||    
T  18973779 gatgtatgtaaatgggggttgccctaggcagttggtttgattgcataaaaagtaaataaatgactgaagaataaaatcggtttggagatgtgtttaaaga 18973878  T
Q  289 agggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctc 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  18973879 agggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgctattcagtttacgacaattaacaaaatagctc 18973978  T
Q  389 agatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaag 466  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  18973979 aggtcaatcccttgactcagaaccctcttttctaattataattccctaattcctcaggtgaacctataatcataaaag 18974056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 83 - 504
Target Start/End: Complemental strand, 7570697 - 7570274
Alignment:
Q  83 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaa 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||  |||||||||||||||| |||||||||||    
T  7570697 ctgatagaaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtattcacagggactgt--tctaatctctacttagaaatttcattaa 7570600  T
Q  183 tatttaggatgtatgtaaatgggggttgcactaggcagt---tggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatg 278  Q
    ||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||     
T  7570599 tatttaggatgtatgtaaatgggggttgccctaggcagtagttgatttgattgcataaaaagtaaataaatgactgaagaataaaattggttttgaaata 7570500  T
Q  279 tgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaac 378  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||||| ||||| |||||||||    
T  7570499 tgtttagagaaaggattaagtctttcgattcatctgtccatcactcatttgtaatctgtatctaactcatatgattgttattcagtttacaacaattaac 7570400  T
Q  379 aaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccg 478  Q
    |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  7570399 aaaatagctcaggtcaatcccttgactcagagccctcttctctgattataattccctaattccttaggtgaatctataaccatcaaaggttttaagtccg 7570300  T
Q  479 ttaattttagaatcacagcataacaa 504  Q
    ||||||||||||||||| | ||||||    
T  7570299 ttaattttagaatcacaacctaacaa 7570274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 83 - 504
Target Start/End: Complemental strand, 7577112 - 7576689
Alignment:
Q  83 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaa 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||  |||||||||||||||| |||||||||||    
T  7577112 ctgatagaaaattagcaagtgtactaatttatatcgaagtaataatttaattcgtattcacagggactgt--tctaatctctacttagaaatttcattaa 7577015  T
Q  183 tatttaggatgtatgtaaatgggggttgcactaggcagt---tggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatg 278  Q
    ||||||||||||||||||||||||||||| |||||||||   || |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||     
T  7577014 tatttaggatgtatgtaaatgggggttgccctaggcagtagttgatttgattgcataaaaagtaaataaatgactgaagaataaaattggttttgaaata 7576915  T
Q  279 tgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaac 378  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||||| ||||| |||||||||    
T  7576914 tgtttagagaaaggattaagtctttcgattcatctgtccatcactcatttgtaatctgtatctaactcatatgattgttattcagtttacaacaattaac 7576815  T
Q  379 aaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccg 478  Q
    |||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||    
T  7576814 aaaatagctcaggtcaatcccttgactcagagccctcttctctgattataattccctaattccttaggtgaatctataaccatcaaaggttttaagtccg 7576715  T
Q  479 ttaattttagaatcacagcataacaa 504  Q
    ||||||||||||||||| | ||||||    
T  7576714 ttaattttagaatcacaacctaacaa 7576689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 505
Target Start/End: Original strand, 1636976 - 1637118
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  1636976 tttacgacaaattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctatagtcatc 1637075  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||  || |||||| | |||||||    
T  1637076 aaaggttttaagtccgttaattcaagtatcacaacctaacaac 1637118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 505
Target Start/End: Original strand, 44673071 - 44673213
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  44673071 tttacgacaaattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctatagtcatc 44673170  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||  || |||||| | |||||||    
T  44673171 aaaggttttaagtccgttaattcaagtatcacaacctaacaac 44673213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 372 - 505
Target Start/End: Original strand, 5189749 - 5189881
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  5189749 aattaacaaaatagct-aggtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctataatcataaaaggtttt 5189847  T
Q  472 aagtccgttaattttagaatcacagcataacaac 505  Q
    |||||||||||||| || |||||| | |||||||    
T  5189848 aagtccgttaatttaagtatcacaacctaacaac 5189881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 6374822 - 6374706
Alignment:
Q  94 ttagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttaggatg 193  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||| ||||||  ||||||||||||||||| ||||||||||||||||| | ||||    
T  6374822 ttagcaagtatactaatttatatcgaagtaataatttaattcgtatccaaagggac--tgttctaatctctacttggcaatttcattaatattcaagatg 6374725  T
Q  194 tatgtaaat-gggggttgc 211  Q
    ||||||||| |||||||||    
T  6374724 tatgtaaatagggggttgc 6374706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 364 - 505
Target Start/End: Original strand, 1633731 - 1633873
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| || ||||||||||||  |  ||||||||||||| ||||||||||| |||| ||||  ||||||||||| |||||    
T  1633731 tttacgacaaattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccttaatcccttcggtgaacctatagtcatc 1633830  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||  || |||||| | |||||||    
T  1633831 aaaggttttaagtccgttaattcaagtatcacaacctaacaac 1633873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 364 - 477
Target Start/End: Complemental strand, 20436735 - 20436621
Alignment:
Q  364 tttacgaca-attaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    ||||||||| ||||||||||||||| || | ||||||||||  |  ||||||||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  20436735 tttacgacatattaacaaaatagcttaggtgaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctataatcatc 20436636  T
Q  463 aaaggttttaagtcc 477  Q
    |||||||||||||||    
T  20436635 aaaggttttaagtcc 20436621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 364 - 508
Target Start/End: Complemental strand, 231836 - 231691
Alignment:
Q  364 tttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatca 463  Q
    ||||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||  |||| ||| |||||||  |||| ||||| | |||||| |||    
T  231836 tttacgataattaagaaaatagctcag-tcaatcccttgactcagagtcctcttttcatattacaatcccctaatctcttaggtgaatccataatcttca 231738  T
Q  464 aaggttttaa-gtccgttaattttag-aatcacagcataacaacttt 508  Q
    ||||||| || ||||||||||||||| ||||||| | ||||||||||    
T  231737 aaggtttgaatgtccgttaattttagaaatcacaacttaacaacttt 231691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 387 - 508
Target Start/End: Complemental strand, 27059326 - 27059203
Alignment:
Q  387 tcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttt-taagtccgttaattt 485  Q
    |||| |||||||||||||||| |||||||||||||||||| |||| | ||||  |||| | |||||| |||||||||||| |||  |||||| |||||||    
T  27059326 tcaggtcaatcccttgactcatagccctcttttctaattacaatttcttaatcacttaggcgaacctgtaatcatcaaagttttgaaagtccattaattt 27059227  T
Q  486 t-agaatcacagcataacaacttt 508  Q
    | | ||||||| | ||||||||||    
T  27059226 taaaaatcacaacttaacaacttt 27059203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 6374623 - 6374575
Alignment:
Q  301 tttcgattcatctgtccatcgctcattagtaatctgcatctaaatcata 349  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  6374623 tttcgaatcatctgtccattgctcattattaatctgcatctaaatcata 6374575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 232075 - 231939
Alignment:
Q  94 ttagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttaggatg 193  Q
    ||||||||||||||||||||| || ||| ||||||| ||||   ||||||| ||||  |  |||||| ||||||| |||||||||| |||||| |  ||     
T  232075 ttagcaagtgtactaatttatttcaaagcaataattaaatttgtatccacaaggac--tactctaatttctacttggcaatttcatcaatattcaaaata 231978  T
Q  194 tatgtaaatgggggttgcact-aggcagttggtttgatt 231  Q
    ||  ||| |||||| |||||| ||||| |||||||||||    
T  231977 taattaattgggggatgcactaaggcaattggtttgatt 231939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 1636700 - 1636735
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  1636700 aattagcaagtgtactaacttatatcgaagtaataa 1636735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 5189463 - 5189498
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  5189463 aattagcaagtgtactaacttatatcgaagtaataa 5189498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 506
Target Start/End: Original strand, 21659083 - 21659225
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| || |||||||| |||   | ||| ||||||| |   ||||| ||||||||  |||  |||||||||||||  |     
T  21659083 tttacgacaaattaacaaaatagcttaggtcaatcccgtgatcgaaagctctcttttttggctataagtccctaatcacttg-gtgaacctataatagta 21659181  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaact 506  Q
    |||||||| |||||||||||||| || |||||| | ||||||||    
T  21659182 aaaggtttgaagtccgttaatttaagtatcacaacctaacaact 21659225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 44672795 - 44672830
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  44672795 aattagcaagtgtactaacttatatcgaagtaataa 44672830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 239
Target Start/End: Complemental strand, 24918413 - 24918379
Alignment:
Q  205 gggttgcactaggcagttggtttgattgcataaaa 239  Q
    ||||||| |||||||||||||||||||||||||||    
T  24918413 gggttgccctaggcagttggtttgattgcataaaa 24918379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 2090826 - 2090793
Alignment:
Q  205 gggttgcactaggcagttggtttgattgcataaa 238  Q
    ||||||| ||||||||||||||||||||||||||    
T  2090826 gggttgccctaggcagttggtttgattgcataaa 2090793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 20437013 - 20436977
Alignment:
Q  91 aaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||| |||||||||||| |||||||||||||||||    
T  20437013 aaattaacaagtgtactaacttatatcgaagtaataa 20436977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 215 - 508
Target Start/End: Complemental strand, 3252540 - 3252248
Alignment:
Q  215 aggcagttggtttgattgcataaaaagtaaataaatga-tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatct 313  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||  |||||||||||||||||||||||    
T  3252540 aggcagttggtttgattgcataaaaagtaaataaatgactgaagaataaaatcggttttgaaatatgtttagagacaggattaagtctttcgattcatct 3252441  T
Q  314 gtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctcagatcaatcccttgactcagagccc 413  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||    
T  3252440 gtccatcactcattagtaatctgcatctaaatcatatgattgttattcagtttacgacaattaacaaaatagctcaggtcaatcccttgactc--agccc 3252343  T
Q  414 tcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgttaattttagaatcacagcataacaacttt 508  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | |||||||||||||||| | ||||||||||    
T  3252342 tcttttctaattataattccctaattccttaggtgaacctataatcatcaaaggttttaaatcagataattttagaatcacaacctaacaacttt 3252248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 298 - 473
Target Start/End: Complemental strand, 23258922 - 23258746
Alignment:
Q  298 gtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaa-tttacgacaattaacaaaatagctcagatcaat 396  Q
    ||||||||| |||||||| |||| || |||||||||||| | ||||| ||| | |||| |  || | |||| |  ||||||||||||||||||| |||||    
T  23258922 gtctttcgaatcatctgttcatcactaattagtaatctgaacctaaaccatttaattgctcctccagtttaagctaattaacaaaatagctcaggtcaat 23258823  T
Q  397 cccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaa 473  Q
    ||||||||| ||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  23258822 cccttgactgagagcccacttttctaattataattccctaatcccttacgtgaacctataatcatcaaaggttttaa 23258746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 505
Target Start/End: Complemental strand, 35076984 - 35076842
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  35076984 tttacgacaaattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctatagtcatc 35076885  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||  || |||||| | |||||||    
T  35076884 aaaggttttaagtccgttaattcaagtatcacaacctaacaac 35076842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 505
Target Start/End: Complemental strand, 35080242 - 35080100
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  35080242 tttacgacaaattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctatagtcatc 35080143  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||  || |||||| | |||||||    
T  35080142 aaaggttttaagtccgttaattcaagtatcacaacctaacaac 35080100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 364 - 470
Target Start/End: Complemental strand, 13613387 - 13613281
Alignment:
Q  364 tttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatca 463  Q
    ||||||| |||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||| ||| ||||||| | ||| |||||| | ||||| |||    
T  13613387 tttacgataattaacaaaatagttcaggtcaatcccttgactcagagccctattttcaaattacaatcccctaatccattaggtgaacttgtaatcctca 13613288  T
Q  464 aaggttt 470  Q
    |||||||    
T  13613287 aaggttt 13613281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 485
Target Start/End: Original strand, 6277259 - 6277333
Alignment:
Q  411 ccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgttaattt 485  Q
    |||| |||||| |||||||||| ||||| ||||| |||||| ||||||||| |||||||||||||||||||||||    
T  6277259 ccctattttctcattataattctctaatcccttaggtgaacttataatcataaaaggttttaagtccgttaattt 6277333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 27188782 - 27188850
Alignment:
Q  16 caaaaatagcatgaaatcccttacacaccaatcctgcatgttagctttctcttattcctccctgtccct 84  Q
    ||||||||| ||||||||||| ||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  27188782 caaaaatagtatgaaatccctcacacacatatcttgcatgttagctttctcttattcctccccgtccct 27188850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 27838596 - 27838664
Alignment:
Q  16 caaaaatagcatgaaatcccttacacaccaatcctgcatgttagctttctcttattcctccctgtccct 84  Q
    ||||||||| ||||||||||| ||||||  ||| |||||||||||||||||||||||||||| ||||||    
T  27838596 caaaaatagtatgaaatccctcacacacatatcttgcatgttagctttctcttattcctccccgtccct 27838664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 6276923 - 6276965
Alignment:
Q  85 gataaaaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  6276923 gataaaaaattagcaagtgtactaacttatatcgaagtaataa 6276965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 27195987 - 27196053
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||| ||||||||||||||||||| |||||||||||||  ||||||| | |||||||||||||||    
T  27195987 tctaatcataattccctaattccttaggtgaacctataattctcaaaggatattaagtccgttaatt 27196053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 415 - 484
Target Start/End: Complemental strand, 27499282 - 27499212
Alignment:
Q  415 cttttctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||  ||||||| | |||||||||||||||    
T  27499282 cttttctaatcataattccctaatcccttaggtgaacctataattgtcaaaggatattaagtccgttaatt 27499212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 29445549 - 29445615
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| | |||||||| ||||||    
T  29445549 tctaatcataattccctaattccttaggtgaacctataatcgtcaaaggatattaagtccattaatt 29445615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 4696994 - 4697060
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||| ||||||||||||| ||||| |||||||||||||  ||||||| | |||||||||||||||    
T  4696994 tctaatcataattccctaatcccttaggtgaacctataattgtcaaaggatattaagtccgttaatt 4697060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 16881642 - 16881605
Alignment:
Q  90 aaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||||| |||||||||||||||||    
T  16881642 aaaattagcaagtgtactaacttatatcgaagtaataa 16881605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 17039332 - 17039295
Alignment:
Q  90 aaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||||| |||||||||||||||||    
T  17039332 aaaattagcaagtgtactaacttatatcgaagtaataa 17039295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 33749774 - 33749731
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||    
T  33749774 tgatacaaatttagcaagtgtactaacttatatcgaagtaataa 33749731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 35077263 - 35077228
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  35077263 aattagcaagtgtactaacttatatcgaagtaataa 35077228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 35080521 - 35080486
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  35080521 aattagcaagtgtactaacttatatcgaagtaataa 35080486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 38027092 - 38027051
Alignment:
Q  364 tttacgacaattaacaaaatagctcagatcaatcccttgact 405  Q
    ||||||| ||||||||||||||||| |||||||| |||||||    
T  38027092 tttacgataattaacaaaatagctctgatcaatctcttgact 38027051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 188 - 513
Target Start/End: Original strand, 27805468 - 27805797
Alignment:
Q  188 aggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaagtaaat---aaatga-tgaagaataaaatcggttttgagatgtgttt 283  Q
    |||||||||  ||||||||||||  ||||||||||||||||||||||||||||||||||   |||||| |||||||||||||||||||||| || |||||    
T  27805468 aggatgtattaaaatgggggttgtcctaggcagttggtttgattgcataaaaagtaaattataaatgactgaagaataaaatcggttttgaaatatgttt 27805567  T
Q  284 agagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaat 383  Q
    |||||| ||||||||||||| |||||||||||||||| | |||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||    
T  27805568 agagaaaggattaagtcttttgattcatctgtccatctcacattggtaatctgcatttaaatcatatgattgctattcagtttacgacaattaacaaaat 27805667  T
Q  384 agctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgttaat 483  Q
    || |||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||||    
T  27805668 agttcaggtcaatccctcgagtcagagccatcttttctaattataattccctaattccttaggtgaacctataatcatcaatggttttaaatcagttaat 27805767  T
Q  484 tttagaatcacagcataacaacttttcatc 513  Q
    |||||||| ||| | |||||||||||||||    
T  27805768 tttagaattacaacctaacaacttttcatc 27805797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 242 - 508
Target Start/End: Original strand, 8855839 - 8856106
Alignment:
Q  242 taaataaatga-tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatc 340  Q
    ||||||||||| | ||||||||||| |||||||| || | |||||||||  ||||| ||||| ||| |||| |||||||| ||||||||||||| |||||    
T  8855839 taaataaatgactaaagaataaaattggttttgaaatatatttagagaaaagattaggtctt-cgaatcatttgtccatcactcattagtaatccgcatc 8855937  T
Q  341 taaatcatatgattgttattcaatttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattc 440  Q
    ||||| || | |||| || |||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||| |||||||| |||| |    
T  8855938 taaattatttaattgctactcaatttacgacaattaacaaagtatctcaggtcaatcccttgaatcagagccctcttttctaatcataattccataatcc 8856037  T
Q  441 cttaagtgaacctataatcatcaaaggtttta-agtccgttaattttagaatcacagcataacaacttt 508  Q
    | || ||||||||||||||||||||||||||| | ||| ||||||| ||| ||||| | ||||||||||    
T  8856038 cataggtgaacctataatcatcaaaggttttacaatccattaatttcagagtcacaacctaacaacttt 8856106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 242 - 508
Target Start/End: Original strand, 8857312 - 8857579
Alignment:
Q  242 taaataaatga-tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatc 340  Q
    ||||||||||| | ||||||||||| |||||||| || | |||||||||  ||||| ||||| ||| |||| |||||||| ||||||||||||| |||||    
T  8857312 taaataaatgactaaagaataaaattggttttgaaatatatttagagaaaagattaggtctt-cgaatcatttgtccatcactcattagtaatccgcatc 8857410  T
Q  341 taaatcatatgattgttattcaatttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattc 440  Q
    ||||| || | |||| || |||||||||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||| |||||||| |||| |    
T  8857411 taaattatttaattgctactcaatttacgacaattaacaaagtatctcaggtcaatcccttgaatcagagccctcttttctaatcataattccataatcc 8857510  T
Q  441 cttaagtgaacctataatcatcaaaggtttta-agtccgttaattttagaatcacagcataacaacttt 508  Q
    | || ||||||||||||||||||||||||||| | ||| ||||||| ||| ||||| | ||||||||||    
T  8857511 cataggtgaacctataatcatcaaaggttttacaatccattaatttcagagtcacaacctaacaacttt 8857579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 372 - 505
Target Start/End: Complemental strand, 5952187 - 5952054
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  5952187 aattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccctaattccttaggtgaacctataatcataaaaggtttt 5952088  T
Q  472 aagtccgttaattttagaatcacagcataacaac 505  Q
    |||||||||||||| || |||||| | |||||||    
T  5952087 aagtccgttaatttaagtatcacaacctaacaac 5952054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 372 - 505
Target Start/End: Complemental strand, 33383421 - 33383288
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||  |  | ||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  33383421 aattaacaaaatagcttaggtcaatcccttgatcctaaaccctcttttctgattataattccctaattccttaggtgaacctataatcataaaaggtttt 33383322  T
Q  472 aagtccgttaattttagaatcacagcataacaac 505  Q
    |||||||||||||| || |||||| | |||||||    
T  33383321 aagtccgttaatttaagtatcacaacctaacaac 33383288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 372 - 513
Target Start/End: Original strand, 12104541 - 12104685
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||  ||||| ||||| ||||||||||||||||||||||||||    
T  12104541 aattaacaaaatagctcaggacaatcccttgactaagagccctcttttctaattataatttgctaatcccttacgtgaacctataatcatcaaaggtttt 12104640  T
Q  472 -aagtccgttaattttagaatcacagc---ataacaacttttcatc 513  Q
     |||| |||||| || ||||||||| |   ||||||||||||||||    
T  12104641 aaagtgcgttaa-ttcagaatcacaacctaataacaacttttcatc 12104685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 505
Target Start/End: Original strand, 2847865 - 2848007
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||| | || ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| ||||||||||||||||     
T  2847865 tttacgacaaattaacaaaatagtttaggtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctataatcata 2847964  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||| || |||||| | |||||||    
T  2847965 aaaggttttaagtccgttaatttaagtatcacaacctaacaac 2848007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 372 - 505
Target Start/End: Complemental strand, 29354341 - 29354208
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||||||   | ||||||  | ||||||||| |||| |  |||| |||||||||||||||| ||||||||     
T  29354341 aattaacaaaatagcttaggtcaatcccttgactcaagactctctttcttgattataatttcctactcgcttaggtgaacctataatcatgaaaggtttg 29354242  T
Q  472 aagtccgttaattttagaatcacagcataacaac 505  Q
    |||||||||||||| || |||||| | |||||||    
T  29354241 aagtccgttaatttaagtatcacaacctaacaac 29354208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 214
Target Start/End: Original strand, 2847580 - 2847715
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaata--attta----attctaatccacagggactgtgttctaatctctacttagcaatttc 177  Q
    ||||| |||||||||||||||||||| ||||||||||||||||  |||||    ||||  ||||||||||||||| ||| ||  ||||||  | ||| ||    
T  2847580 tgatagaaaattagcaagtgtactaacttatatcgaagtaataacatttataagattcgtatccacagggactgt-ttc-aacttctactcggtaatgtc 2847677  T
Q  178 attaatatttaggatgtatgt-aaatgggggttgcact 214  Q
    |||| |||| ||||||||||| ||||||||||||||||    
T  2847678 attattattaaggatgtatgtaaaatgggggttgcact 2847715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 452
Target Start/End: Complemental strand, 10648692 - 10648626
Alignment:
Q  386 ctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacc 452  Q
    ||||| ||||| |||||||||||||||| ||||||||| ||||||| || ||| ||||| |||||||    
T  10648692 ctcaggtcaataccttgactcagagcccccttttctaactataatttcccaatcccttaggtgaacc 10648626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 10649672 - 10649566
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaat 183  Q
    ||||||||  |||||| || |||||||||| ||| ||||||||||| ||||   ||||||| |||||    |||||||||| |||||||||||||| |||    
T  10649672 tgataaaattttagcatgtatactaatttaaatcaaagtaataattaaatttgtatccacaaggactag--tctaatctcttcttagcaatttcatcaat 10649575  T
Q  184 atttaggat 192  Q
    ||| |||||    
T  10649574 attcaggat 10649566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 31467955 - 31468038
Alignment:
Q  156 ctaatctctacttagcaatttcattaatatttaggatgtatgtaaatgggggttgcactaggcagttggtttgattgcataaaaa 240  Q
    ||||| |||||||||||||| ||||||| |  | | ||||| |||||  ||||||| ||||||| ||||||||||||||||||||    
T  31467955 ctaatttctacttagcaattgcattaatgtaaaagttgtat-taaatttgggttgccctaggcaattggtttgattgcataaaaa 31468038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 33383715 - 33383671
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataat 128  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||    
T  33383715 tgatagaaaattagcaagtgtactaacttatatggaagtaataat 33383671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 5952473 - 5952438
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  5952473 aattagcaagtgtactaacttatatcgaagtaataa 5952438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 458
Target Start/End: Original strand, 33578369 - 33578407
Alignment:
Q  420 ctaattataattccctaattccttaagtgaacctataat 458  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  33578369 ctaatcataattccctaattccttaggtgaacctataat 33578407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 8855083 - 8855123
Alignment:
Q  94 ttagcaagtgtactaatttatatcgaagtaataatttaatt 134  Q
    ||||||||| || ||||||||| ||||||||||||||||||    
T  8855083 ttagcaagtttattaatttataccgaagtaataatttaatt 8855123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 253 - 513
Target Start/End: Original strand, 34855570 - 34855830
Alignment:
Q  253 tgaagaataaaatcggttttgagatgtgtttagagaagggattaagtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatga 352  Q
    ||||||||||||| |||||||| || |||||| |||| |||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||    
T  34855570 tgaagaataaaataggttttgaaatatgtttaaagaaaggattaagtctttcgatttatctgtccatcactcattagtaatctgcatttaaaacatatga 34855669  T
Q  353 ttgttattcaatttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacc 452  Q
    ||  |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  34855670 tttctattcagtttacgacaattaacaaaatagctcaggtcaatcccttgactcagagccatctcttctaattataattccctaattccttaggtgaacc 34855769  T
Q  453 tataatcatcaaaggttttaagtccgttaattttagaatcacagcataacaacttttcatc 513  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||    
T  34855770 tataatcatcaaaggttttaagtccgttaattttagaatcacaacctaacaactttccatc 34855830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 364 - 484
Target Start/End: Original strand, 21614355 - 21614476
Alignment:
Q  364 tttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatca 463  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||| ||||| ||||||||||||||||      
T  21614355 tttacgataattaacaaaatagctcagttcaatcccttaactcagagacctcttttctaattataattctctaatcccttaggtgaacctataatcatag 21614454  T
Q  464 aaggtttt-aagtccgttaatt 484  Q
    |||||||| |||||||||||||    
T  21614455 aaggttttaaagtccgttaatt 21614476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 372 - 485
Target Start/End: Original strand, 22884373 - 22884486
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||  || |||| |||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  22884373 aattaacaaaatagcttaggtcaatcccttgatccaaagccgtcttttctgattataattccctaatcccttaggtgaacctataatcataaaaggtttt 22884472  T
Q  472 aagtccgttaattt 485  Q
    ||||||||||||||    
T  22884473 aagtccgttaattt 22884486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 372 - 485
Target Start/End: Original strand, 22936037 - 22936150
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||  || |||| |||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  22936037 aattaacaaaatagcttaggtcaatcccttgatccaaagccgtcttttctgattataattccctaatcccttaggtgaacctataatcataaaaggtttt 22936136  T
Q  472 aagtccgttaattt 485  Q
    ||||||||||||||    
T  22936137 aagtccgttaattt 22936150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 372 - 485
Target Start/End: Original strand, 48961769 - 48961882
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||   | ||||||||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  48961769 aattaacaaaatagcttaggtcaatcccttgatcaaaagccctcttttctgattataattccctaatcccttaggtgaacctataatcataaaaggtttt 48961868  T
Q  472 aagtccgttaattt 485  Q
    ||||||||||||||    
T  48961869 aagtccgttaattt 48961882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 14617413 - 14617347
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaaggtt-ttaagtccgttaatt 484  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  14617413 tctaatcataattccctaattccttaggtgaacctataatcatcaaagattgttaagtccgttaatt 14617347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 12194478 - 12194412
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||    
T  12194478 tctaatcataattccctaattccttaggtgaacctataatcgtcaaaggatattaagtccgttaatt 12194412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 419 - 467
Target Start/End: Complemental strand, 22755657 - 22755609
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaagg 467  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||    
T  22755657 tctaattataattccctaattccttaggggaacctataatcatcaaagg 22755609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 409 - 485
Target Start/End: Complemental strand, 54899828 - 54899752
Alignment:
Q  409 agccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgttaattt 485  Q
    |||||||||| || |||||||||||||||||||| | ||||||||||| ||||  ||||||  ||||||||||||||    
T  54899828 agccctctttcctgattataattccctaattcctcaggtgaacctatattcattcaaggttaaaagtccgttaattt 54899752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 458
Target Start/End: Original strand, 21557644 - 21557730
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataat 458  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||  ||||| |||  | | || ||||| |||||||||||||    
T  21557644 aattaacaaaatagttcaggttaatcccttgactcagagccctcttttgaaattacaatctcatgatcccttaggtgaacctataat 21557730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 33493575 - 33493612
Alignment:
Q  213 ctaggcagttggtttgattgcataaaaagtaaataaat 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33493575 ctaggcagttggtttgattgcataaaaagtaaataaat 33493612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 451 - 484
Target Start/End: Complemental strand, 12705967 - 12705934
Alignment:
Q  451 cctataatcatcaaaggttttaagtccgttaatt 484  Q
    ||||||||||||||||||||||||||||||||||    
T  12705967 cctataatcatcaaaggttttaagtccgttaatt 12705934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 21557366 - 21557456
Alignment:
Q  94 ttagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatt 186  Q
    |||| ||||||||||| |||||| ||| |||||||| ||||   |||||| | |||| | ||  |||||||||||||||||||||||||||||    
T  21557366 ttagtaagtgtactaaattatatagaattaataattaaatttgtatccacggtgactatttt--aatctctacttagcaatttcattaatatt 21557456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 14617745 - 14617662
Alignment:
Q  83 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 169  Q
    |||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  14617745 ctgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 14617662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 25186399 - 25186356
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||    
T  25186399 tgatagaaaattagcaagtgaactaatttaaatcgaagtaataa 25186356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 54900123 - 54900089
Alignment:
Q  93 attagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||||||||||||||| |||||||||||||||||    
T  54900123 attagcaagtgtactaacttatatcgaagtaataa 54900089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 12194811 - 12194783
Alignment:
Q  84 tgataaaaaattagcaagtgtactaattt 112  Q
    |||||||||||||||||||||||||||||    
T  12194811 tgataaaaaattagcaagtgtactaattt 12194783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 298 - 513
Target Start/End: Original strand, 11184047 - 11184262
Alignment:
Q  298 gtctttcgattcatctgtccatcgctcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctcagatcaatc 397  Q
    |||||| || |||||| | |||| ||||||||||||||||| ||||||| ||||| ||||||||| ||||| ||||||||||||||||||||| ||||||    
T  11184047 gtcttttgaatcatctattcatcactcattagtaatctgcacctaaatcgtatgactgttattcagtttacaacaattaacaaaatagctcaggtcaatc 11184146  T
Q  398 ccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgttaattttagaatcacagc 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| || |    
T  11184147 ccttgactcagagccctcttttctaattataattccctaattccttaggtgaacctataatcatcaaaggttttaagtccgttaattttataatcgcaac 11184246  T
Q  498 ataacaacttttcatc 513  Q
     |||||||||| ||||    
T  11184247 ctaacaactttccatc 11184262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 372 - 505
Target Start/End: Complemental strand, 964820 - 964687
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||    
T  964820 aattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccctaattccttaggtgaacctataatcataaaaggtttt 964721  T
Q  472 aagtccgttaattttagaatcacagcataacaac 505  Q
    |||||||||||||| || |||||| | |||||||    
T  964720 aagtccgttaatttaagtatcacaacctaacaac 964687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 364 - 505
Target Start/End: Complemental strand, 5190603 - 5190461
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| |  ||||||||||||  |  ||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||    
T  5190603 tttacgacaaattaacaaaatagcttaagtcaatcccttgatcctaagccctcttttataattataattccctaatcccttaggtgaacctatagtcatc 5190504  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||  || |||||| | |||||||    
T  5190503 aaaggttttaagtccgttaattcaagtatcacaacctaacaac 5190461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 377 - 484
Target Start/End: Complemental strand, 27315939 - 27315832
Alignment:
Q  377 acaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtc 476  Q
    ||||||||||| || ||||||||||||  |   |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||  | |    
T  27315939 acaaaatagcttaggtcaatcccttgatcctaggccctcttttctgattataattccctaatcccttaggtgaacctataatcatcaaaggttttgtgcc 27315840  T
Q  477 cgttaatt 484  Q
    ||||||||    
T  27315839 cgttaatt 27315832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 15394252 - 15394318
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||| |||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||    
T  15394252 tctaatcataattccctaattgcttaggtgaacctataatcatcaaaggtttttaagtccgttaatt 15394318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 419 - 468
Target Start/End: Original strand, 12489189 - 12489238
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaaggt 468  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  12489189 tctaattataattccctaatcccttaggtgaacctataatcatcaaaggt 12489238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 965115 - 965071
Alignment:
Q  83 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||| |||||||||||||||||||| |||||||||||||||||    
T  965115 ctgatagaaaattagcaagtgtactaacttatatcgaagtaataa 965071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 17733248 - 17733291
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||| |||||||||||||||||||| |||||||||||||||||    
T  17733248 tgatagaaaattagcaagtgtactaacttatatcgaagtaataa 17733291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 323 - 513
Target Start/End: Complemental strand, 8435256 - 8435075
Alignment:
Q  323 tcattagtaatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttcta 422  Q
    |||||||||||||||| ||||||| ||||  ||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  8435256 tcattagtaatctgcacctaaatcgtatggctgttattcagtttacaacaattaacaaaatagctcaggtcaatcccttgactcagggccctcttttcta 8435157  T
Q  423 attataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccgttaattttagaatcacagcataacaacttttcatc 513  Q
    |||||||||||||         |||||| |||||||||||||||||||||||||||||||||||| |||| || | |||||||||| ||||    
T  8435156 attataattccct---------agtgaatctataatcatcaaaggttttaagtccgttaattttataatcgcaacctaacaactttccatc 8435075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 94 - 211
Target Start/End: Complemental strand, 28957361 - 28957245
Alignment:
Q  94 ttagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttaggatg 193  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||| ||||||||||||||||| | ||||    
T  28957361 ttagcaagtgtactaatttatatcgaagtaataatttaattcgtatccacagggac--tgttctaatctctacttggcaatttcattaatattcaagatg 28957264  T
Q  194 tatgtaaa-tgggggttgc 211  Q
    |||||||| ||||||||||    
T  28957263 tatgtaaattgggggttgc 28957245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 330 - 495
Target Start/End: Original strand, 26639539 - 26639705
Alignment:
Q  330 taatctgcatctaaatcatatgattgttattcaatttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataa 429  Q
    |||||| || ||||||||||  |||  ||| ||||||||||||||||| ||||||| | || |||||||||||||| ||||| |||||||||||||||||    
T  26639539 taatctacacctaaatcatagaattactatccaatttacgacaattaaaaaaatagtttaggtcaatcccttgacttagagcactcttttctaattataa 26639638  T
Q  430 ttccctaattccttaagtgaacctataatcatcaaaggttttaa-gtccgttaattttagaatcaca 495  Q
    ||| ||||||| |||  ||||||||||||||||||||||||||| || ||||||||| | |||||||    
T  26639639 ttctctaattctttagctgaacctataatcatcaaaggttttaatgtacgttaatttgaaaatcaca 26639705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 379 - 504
Target Start/End: Complemental strand, 28957201 - 28957076
Alignment:
Q  379 aaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttttaagtccg 478  Q
    |||||||||||| |||||||||||| ||| ||  ||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||    
T  28957201 aaaatagctcaggtcaatcccttgattcataggtctcttctctgattataattctctaattccttaggtgaacctataatcatcaaagggtttaagtccg 28957102  T
Q  479 ttaattttagaatcacagcataacaa 504  Q
    ||||||||||||||||| | ||||||    
T  28957101 ttaattttagaatcacaacctaacaa 28957076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 505
Target Start/End: Original strand, 28138888 - 28139030
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  28138888 tttacgacaaattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctatagtcatc 28138987  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||  || |||||| | |||||||    
T  28138988 aaaggttttaagtccgttaattcaagtatcacaacctaacaac 28139030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 505
Target Start/End: Original strand, 28142139 - 28142281
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| || ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  28142139 tttacgacaaattaacaaaatagcttaggtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctatagtcatc 28142238  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaac 505  Q
    ||||||||||||||||||||||  || |||||| | |||||||    
T  28142239 aaaggttttaagtccgttaattcaagtatcacaacctaacaac 28142281  T

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Target: chr1; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 364 - 504
Target Start/End: Original strand, 14159341 - 14159482
Alignment:
Q  364 tttacgacaa-ttaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatc 462  Q
    |||||||||| |||||||||||||| |  ||||||||||||  |  ||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||    
T  14159341 tttacgacaaattaacaaaatagcttaagtcaatcccttgatcctaagccctcttttctgattataattccctaatcccttaggtgaacctatagtcatc 14159440  T
Q  463 aaaggttttaagtccgttaattttagaatcacagcataacaa 504  Q
    |||||||||||||| |||||||| || |||||| | ||||||    
T  14159441 aaaggttttaagtctgttaatttaagtatcacaacctaacaa 14159482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 373 - 508
Target Start/End: Original strand, 42590868 - 42591003
Alignment:
Q  373 attaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttta 472  Q
    |||||||||||| ||||| ||||| | |||||||| | || |||||||||| || ||||||||||| |||| ||||||||| ||||||||||| ||||||    
T  42590868 attaacaaaataactcaggtcaattctttgactcaaatccatcttttctaactacaattccctaatccctt-agtgaacctgtaatcatcaaaagtttta 42590966  T
Q  473 a-gtccgttaattttagaatcacagcataacaacttt 508  Q
    | ||| |||||||| | ||||||| | ||||||||||    
T  42590967 atgtctgttaatttaaaaatcacaacttaacaacttt 42591003  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 45532684 - 45532750
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||| ||||||||||||||||||| |||||||||||||| ||||||| | |||||||||||||||    
T  45532684 tctaatcataattccctaattccttaggtgaacctataatcgtcaaaggatattaagtccgttaatt 45532750  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 470
Target Start/End: Original strand, 25663142 - 25663240
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttt 470  Q
    |||||||||||||||| || ||||||||||||   | |||||||||| || |||||||||| ||||| | ||| ||||||||||| ||||  |||||||    
T  25663142 aattaacaaaatagcttaggtcaatcccttgatcaaaagccctctttcctgattataattctctaatcctttaggtgaacctatattcattcaaggttt 25663240  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 28411804 - 28411876
Alignment:
Q  118 gaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaatatttaggat 192  Q
    |||||||||||| |||||  |||||| |||||| |  ||||||||||||||||||||||||| |||||| |||||    
T  28411804 gaagtaataattaaattcgtatccaccgggactat--tctaatctctacttagcaatttcataaatattcaggat 28411876  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 412 - 484
Target Start/End: Complemental strand, 17761884 - 17761811
Alignment:
Q  412 cctcttttctaattataattccctaattccttaagtgaacctataatcatcaaagg-ttttaagtccgttaatt 484  Q
    |||||| |||||| ||||||||||||| ||||| |||||||||||||  ||||||| | | |||||||||||||    
T  17761884 cctcttatctaatcataattccctaatcccttaggtgaacctataattgtcaaaggatatcaagtccgttaatt 17761811  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 25662856 - 25662893
Alignment:
Q  90 aaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25662856 aaaattagcaagtgtactaacttatatcgaagtaataa 25662893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Original strand, 21911039 - 21911082
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||    
T  21911039 tgatacaaaattagcaagtgtactaacttatatcgaagaaataa 21911082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 28138611 - 28138646
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  28138611 aattagcaagtgtactaacttatatcgaagtaataa 28138646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 28141861 - 28141896
Alignment:
Q  92 aattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  28141861 aattagcaagtgtactaacttatatcgaagtaataa 28141896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 28412080 - 28412138
Alignment:
Q  392 tcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaa 450  Q
    ||||||||||||||||| || |||||||| |||||  |||||||||| ||||| |||||    
T  28412080 tcaatcccttgactcagtgctctcttttcaaattaggattccctaatcccttatgtgaa 28412138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 14159063 - 14159100
Alignment:
Q  90 aaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  14159063 aaaattaacaagtgtactaacttatatcgaagtaataa 14159100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 24295 - 24170
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctacttagcaatttcattaat 183  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||  |||||||||||||||||  ||||||||| |||    
T  24295 tgatagaaaattagcaagtgtattaatttatatcgaagtaataatttaattcgtatccacaaggac--tgttctaatctctacttgacaatttcatcaat 24198  T
Q  184 atttaggatgtatgtaaatgggggttgc 211  Q
    ||| ||||||||||||||||||||||||    
T  24197 attcaggatgtatgtaaatgggggttgc 24170  T

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Target: scaffold0050 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 362 - 473
Target Start/End: Original strand, 38720 - 38831
Alignment:
Q  362 aatttacgacaattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcat 461  Q
    ||||||| |||||||| |||||||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||| ||||| |||||| |||||||||    
T  38720 aatttacaacaattaataaaatagctcaggtcaatctcttgactcagagccctcttttttaattataattctctaatcccttaggtgaacatataatcat 38819  T
Q  462 caaaggttttaa 473  Q
    ||||||||||||    
T  38820 caaaggttttaa 38831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 38512 - 38563
Alignment:
Q  154 ttctaatctctacttagcaatttcattaatatttaggatgtatgtaaatggg 205  Q
    ||||||||||| | |||||||||||||||||||||  |||||| ||||||||    
T  38512 ttctaatctcttcgtagcaatttcattaatatttaaaatgtatttaaatggg 38563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 372 - 505
Target Start/End: Complemental strand, 157161 - 157028
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggtttt 471  Q
    |||||||||||||||| || ||||||||||||  || ||||||||||||| |||||||||||||||| |||||  ||||||||||||| | |||||||||    
T  157161 aattaacaaaatagcttaggtcaatcccttgatccaaagccctcttttctgattataattccctaatcccttagctgaacctataatcttaaaaggtttt 157062  T
Q  472 aagtccgttaattttagaatcacagcataacaac 505  Q
    |||||||||||||| || |||||| | |||||||    
T  157061 aagtccgttaatttaagtatcacaacctaacaac 157028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 157452 - 157409
Alignment:
Q  84 tgataaaaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||    
T  157452 tgatacaaaattagcaaatgtactaacttatatcgaagtaataa 157409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 199964 - 200030
Alignment:
Q  419 tctaattataattccctaattccttaagtgaacctataatcatcaaaggtt-ttaagtccgttaatt 484  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  199964 tctaatcataattccctaattccttaggtgaacctataatcatcaaagattgttaagtccgttaatt 200030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 199632 - 199715
Alignment:
Q  83 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataatttaattctaatccacagggactgtgttctaatctctactta 169  Q
    |||||| |||||||||||||||||||||||  |||| |||||||| |||||||   ||| |||||||  |||| |||||||||||||    
T  199632 ctgatagaaaattagcaagtgtactaatttgaatcg-agtaataaattaattcgtttcctcagggac--tgttttaatctctactta 199715  T

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Target: scaffold0146 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 372 - 470
Target Start/End: Complemental strand, 35901 - 35803
Alignment:
Q  372 aattaacaaaatagctcagatcaatcccttgactcagagccctcttttctaattataattccctaattccttaagtgaacctataatcatcaaaggttt 470  Q
    |||||||||||||||| |||| ||||||||||  |  |||||||||| || |||||||||| ||||||||| | ||||||||||| ||||  |||||||    
T  35901 aattaacaaaatagcttagataaatcccttgatcctaagccctctttcctgattataattctctaattcctcaggtgaacctatattcattcaaggttt 35803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0884 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 4288 - 4332
Alignment:
Q  83 ctgataaaaaattagcaagtgtactaatttatatcgaagtaataa 127  Q
    |||||| | |||||||||||||||||| |||||||||||||||||    
T  4288 ctgatagataattagcaagtgtactaacttatatcgaagtaataa 4332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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