View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15377_high_1 (Length: 563)
Name: NF15377_high_1
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15377_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 295 - 547
Target Start/End: Complemental strand, 522924 - 522672
Alignment:
| Q |
295 |
cttacagtgatgaaaccaagacggagtgcaaggtaatctgatttttgtatagaactcctaaactgacgcagaaaacatagctgcaatgcaaggtcggatc |
394 |
Q |
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| T |
522924 |
cttacagtgatgaaaccaagacggagtgcaaggtaatctgatttttgtatagaactcctaaactgacgcagaaaacatagctgcaatgcaaggtcagatc |
522825 |
T |
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| Q |
395 |
actgtgagttttcaccctaaaatatgtaagtataaggttgatattaagcatatttagaagtaaaaaggttatttcattatcttgtcatactttcgaaact |
494 |
Q |
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| T |
522824 |
actgtgagttatcaccctaaaatatgtaagtataaggttgatattaagcatatttagaagtaaaaaggttatttcattatcttgtcatactttcgaaact |
522725 |
T |
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| Q |
495 |
gatatatttttcaactagaaagatgcaatgattggttcaattgctagcaaaac |
547 |
Q |
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| T |
522724 |
gatatatttttcaactagaaagatgcaatgattggttcaattgctagcaaaac |
522672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 523204 - 522976
Alignment:
| Q |
15 |
atcacctcaacatgcttttctttaaacagtatgcatgaattgataaatnnnnnnncacttctattcaaaagggttcataccttattcctagaatgccatg |
114 |
Q |
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| T |
523204 |
atcacctcaacatgcttttctttaaacagtatgcatgaattgataaataaaaatacacttctattcaaaagggttcataccttattcctagaatgccatg |
523105 |
T |
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| Q |
115 |
aaattcgtcttccatgcttctaaccatatatttatgaaaatcatatgataatggcaatttatgttcctgaaaatttataaagtagggaataaataagact |
214 |
Q |
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| T |
523104 |
aaattcgtcttccatgcttctaaccatatatttatgaaaatcatatgataatggcaatttatgttcctgaaaatttacaaagtagggaataaataagact |
523005 |
T |
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| Q |
215 |
agtggtataaaataaattatatcagtgag |
243 |
Q |
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| T |
523004 |
agtggtataaaataaattatatcagtgag |
522976 |
T |
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