View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15377_high_2 (Length: 338)

Name: NF15377_high_2
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15377_high_2
NF15377_high_2
[»] chr7 (8 HSPs)
chr7 (244-291)||(43574590-43574637)
chr7 (245-291)||(10463193-10463239)
chr7 (243-291)||(7238922-7238970)
chr7 (248-291)||(1544376-1544419)
chr7 (248-291)||(11396859-11396902)
chr7 (260-291)||(11397296-11397327)
chr7 (242-291)||(15652694-15652743)
chr7 (246-291)||(21109693-21109738)
[»] chr1 (10 HSPs)
chr1 (248-291)||(48410496-48410539)
chr1 (248-291)||(12897435-12897478)
chr1 (248-291)||(21090960-21091003)
chr1 (248-291)||(26020300-26020343)
chr1 (248-291)||(51841348-51841391)
chr1 (258-291)||(28701268-28701301)
chr1 (258-291)||(42972316-42972349)
chr1 (243-291)||(19791141-19791189)
chr1 (243-291)||(33707264-33707312)
chr1 (248-292)||(35531138-35531182)
[»] chr8 (8 HSPs)
chr8 (248-291)||(2827160-2827203)
chr8 (244-291)||(10409499-10409546)
chr8 (248-291)||(17842815-17842858)
chr8 (234-291)||(30806224-30806281)
chr8 (258-291)||(36126608-36126641)
chr8 (258-291)||(41590248-41590281)
chr8 (243-291)||(41590681-41590729)
chr8 (248-292)||(44265797-44265841)
[»] chr3 (5 HSPs)
chr3 (248-291)||(15771803-15771846)
chr3 (248-291)||(8575211-8575254)
chr3 (248-291)||(44809182-44809225)
chr3 (248-285)||(33475377-33475414)
chr3 (260-292)||(29348195-29348227)
[»] scaffold0627 (1 HSPs)
scaffold0627 (260-292)||(6852-6884)
[»] scaffold0024 (1 HSPs)
scaffold0024 (235-291)||(47738-47794)
[»] chr6 (8 HSPs)
chr6 (243-291)||(3375642-3375690)
chr6 (243-291)||(5087087-5087135)
chr6 (243-291)||(20897706-20897754)
chr6 (258-291)||(861267-861300)
chr6 (258-291)||(939188-939221)
chr6 (258-291)||(24958795-24958828)
chr6 (258-291)||(30661130-30661163)
chr6 (243-291)||(11400414-11400462)
[»] chr5 (9 HSPs)
chr5 (235-291)||(8404281-8404337)
chr5 (243-291)||(22022992-22023040)
chr5 (248-292)||(30698581-30698625)
chr5 (235-291)||(37103383-37103439)
chr5 (244-286)||(19333308-19333350)
chr5 (258-291)||(37446753-37446786)
chr5 (260-292)||(19332381-19332413)
chr5 (248-292)||(30733856-30733900)
chr5 (235-291)||(43210973-43211029)
[»] scaffold1191 (1 HSPs)
scaffold1191 (248-291)||(1019-1062)
[»] chr4 (4 HSPs)
chr4 (248-291)||(22068450-22068493)
chr4 (248-291)||(38499640-38499683)
chr4 (235-291)||(28448277-28448333)
chr4 (248-292)||(55283459-55283503)
[»] chr2 (10 HSPs)
chr2 (244-291)||(4327949-4327996)
chr2 (248-291)||(7439572-7439615)
chr2 (248-291)||(13371895-13371938)
chr2 (248-291)||(37592787-37592830)
chr2 (248-291)||(40364786-40364829)
chr2 (185-222)||(13324562-13324599)
chr2 (258-291)||(35498903-35498936)
chr2 (234-291)||(40365227-40365284)
chr2 (235-291)||(41120636-41120692)
chr2 (248-288)||(42274199-42274239)
[»] scaffold0014 (1 HSPs)
scaffold0014 (248-288)||(123487-123527)


Alignment Details
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 43574637 - 43574590
Alignment:
Q  244 cctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  43574637 cctgtaaaatttggaacttttaagtttagtccttacttaattttaata 43574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 10463193 - 10463239
Alignment:
Q  245 ctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  10463193 ctgtaaaatttgaaacttctaagtttagtccttacttaattttaata 10463239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 7238970 - 7238922
Alignment:
Q  243 tcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  7238970 tcctataaaattggaatcttttaagtttagtccttacttaattttaata 7238922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 1544376 - 1544419
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  1544376 taaaattagaaacttctaagtttagtccttacttaattttaata 1544419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 11396859 - 11396902
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| |||| || ||||||||||||||||||||||||||||    
T  11396859 taaaattggaaatttctaagtttagtccttacttaatttaaata 11396902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 291
Target Start/End: Complemental strand, 11397327 - 11397296
Alignment:
Q  260 cttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||||||    
T  11397327 cttttaagtttagtccttacttaatttaaata 11397296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Original strand, 15652694 - 15652743
Alignment:
Q  242 atcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||| |||||||  |||||||||||||||||||| ||||||||| ||||    
T  15652694 atcctataaaattgtaaacttttaagtttagtcctaacttaatttgaata 15652743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 21109738 - 21109693
Alignment:
Q  246 tgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||| | | ||||||||||||||||||||||||||| ||||    
T  21109738 tgtaaaattgggaccttttaagtttagtccttacttaattttaata 21109693  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 48410539 - 48410496
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  48410539 taaaatttgaaacttttaagtttagtccttacttaattttaata 48410496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 12897478 - 12897435
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  12897478 taaaattggaaccttttaagtttagtccttacttaattttaata 12897435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 21090960 - 21091003
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||    
T  21090960 taaaattggaaaattttaagtttagtccttacttaattttaata 21091003  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 26020300 - 26020343
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  26020300 taaaattggaaacttctaagtttagtccttacttaattttaata 26020343  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 51841391 - 51841348
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  51841391 taaaattggaaccttttaagtttagtccttacttaattttaata 51841348  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 28701301 - 28701268
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  28701301 aacttttaagtttagtccttacttaattttaata 28701268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 42972349 - 42972316
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  42972349 aacttttaagtttagtccttacttaattttaata 42972316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 19791141 - 19791189
Alignment:
Q  243 tcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||| ||||||| | | ||||||||||||||||||||||||||| ||||    
T  19791141 tcctataaaattgggaccttttaagtttagtccttacttaattttaata 19791189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 33707264 - 33707312
Alignment:
Q  243 tcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||| |||||||  ||||||||||||||| |||||||||||||| ||||    
T  33707264 tcctataaaattgaaaacttttaagtttaatccttacttaattttaata 33707312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 35531182 - 35531138
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaataa 292  Q
    ||||||| | ||||| ||||||||||||||||||||||| |||||    
T  35531182 taaaattgggaacttctaagtttagtccttacttaattttaataa 35531138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 2827203 - 2827160
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||    
T  2827203 taaaatttgaagcttttaagtttagtccttacttaattttaata 2827160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 10409499 - 10409546
Alignment:
Q  244 cctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||| | | ||||||||||||||||||||||||||| ||||    
T  10409499 cctgtaaaattgggaccttttaagtttagtccttacttaattttaata 10409546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 17842858 - 17842815
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||||||  |||||||||||||||||||||||||||||| ||||    
T  17842858 taaaattgaaaacttttaagtttagtccttacttaattttaata 17842815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 30806224 - 30806281
Alignment:
Q  234 atttttgaatcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||||||  |||| ||||||| ||||||||||||||||||  ||||||||||| ||||    
T  30806224 atttttggttcctataaaattggaaacttttaagtttagtatttacttaattttaata 30806281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 36126641 - 36126608
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  36126641 aacttttaagtttagtccttacttaattttaata 36126608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 41590248 - 41590281
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  41590248 aacttttaagtttagtccttacttaattttaata 41590281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 41590729 - 41590681
Alignment:
Q  243 tcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||| ||||||| | | ||||||||||||||||||||||||||| ||||    
T  41590729 tcctataaaattgggaccttttaagtttagtccttacttaattttaata 41590681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 44265841 - 44265797
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaataa 292  Q
    ||||||| ||||||| ||||||||||| ||||||||||| |||||    
T  44265841 taaaattggaaacttctaagtttagtctttacttaattttaataa 44265797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 15771803 - 15771846
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  15771803 taaaattggaaacttttaagtttagtccttacttaattttaata 15771846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 8575211 - 8575254
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  8575211 taaaattggaatcttttaagtttagtccttacttaattttaata 8575254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 44809225 - 44809182
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| ||| ||||||||||||||||||||||||||| ||||    
T  44809225 taaaattggaaccttttaagtttagtccttacttaattttaata 44809182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 33475377 - 33475414
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatt 285  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  33475377 taaaattggaaccttttaagtttagtccttacttaatt 33475414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 29348195 - 29348227
Alignment:
Q  260 cttttaagtttagtccttacttaatttaaataa 292  Q
    ||||||||||||||||||||||||||| |||||    
T  29348195 cttttaagtttagtccttacttaattttaataa 29348227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 6852 - 6884
Alignment:
Q  260 cttttaagtttagtccttacttaatttaaataa 292  Q
    |||||||||||||||||||||||||||||||||    
T  6852 cttttaagtttagtccttacttaatttaaataa 6884  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 47738 - 47794
Alignment:
Q  235 tttttgaatcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||||||  ||| |||| |||||||||| ||||||||||||||||||||||| ||||    
T  47738 tttttgatccctataaattttgaaacttataagtttagtccttacttaattttaata 47794  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 3375690 - 3375642
Alignment:
Q  243 tcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||| ||||    
T  3375690 tcctataaaatttgaaacttttaagtttagtcattatttaattttaata 3375642  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 5087087 - 5087135
Alignment:
Q  243 tcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  5087087 tcctataaaattggaaacttctaagtttagtccttacttaattttaata 5087135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 20897706 - 20897754
Alignment:
Q  243 tcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  20897706 tcctataaaattggaaacttctaagtttagtccttacttaattttaata 20897754  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 861267 - 861300
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  861267 aacttttaagtttagtccttacttaattttaata 861300  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 939221 - 939188
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  939221 aacttttaagtttagtccttacttaattttaata 939188  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Original strand, 24958795 - 24958828
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  24958795 aacttttaagtttagtccttacttaattttaata 24958828  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 30661163 - 30661130
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  30661163 aacttttaagtttagtccttacttaattttaata 30661130  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 11400462 - 11400414
Alignment:
Q  243 tcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||| ||||||||| | |||| |||||||||||||||||||||| ||||    
T  11400462 tcctataaaatttggatctttcaagtttagtccttacttaattttaata 11400414  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 8404281 - 8404337
Alignment:
Q  235 tttttgaatcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||||||  ||| ||||||| | ||||||||||||||||||||||||||||| ||||    
T  8404281 tttttgatccctataaaattaggaacttttaagtttagtccttacttaattttaata 8404337  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 22022992 - 22023040
Alignment:
Q  243 tcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  22022992 tcctataaaattggaaacttctaagtttagtccttacttaattttaata 22023040  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 30698581 - 30698625
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaataa 292  Q
    ||||||| ||||||| ||||||||||||||||||||||| |||||    
T  30698581 taaaattggaaacttctaagtttagtccttacttaattttaataa 30698625  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 37103439 - 37103383
Alignment:
Q  235 tttttgaatcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| |||| ||||||| ||||||| |||||||| |||||||||||||| ||||    
T  37103439 tttttgattcctataaaattggaaacttctaagtttaatccttacttaattttaata 37103383  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 19333350 - 19333308
Alignment:
Q  244 cctgtaaaatttgaaacttttaagtttagtccttacttaattt 286  Q
    ||||||||||| | | |||||||||||||||||||||||||||    
T  19333350 cctgtaaaattgggaccttttaagtttagtccttacttaattt 19333308  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 37446786 - 37446753
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  37446786 aacttttaagtttagtccttacttaattttaata 37446753  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 19332381 - 19332413
Alignment:
Q  260 cttttaagtttagtccttacttaatttaaataa 292  Q
    ||||||||||||||||||||||||||| |||||    
T  19332381 cttttaagtttagtccttacttaattttaataa 19332413  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 30733856 - 30733900
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaataa 292  Q
    ||||||| ||||||| ||||||||||| ||||||||||| |||||    
T  30733856 taaaattggaaacttctaagtttagtcgttacttaattttaataa 30733900  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 43211029 - 43210973
Alignment:
Q  235 tttttgaatcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||||||  ||| ||||||| | | ||||||||||||||||||||||||||| ||||    
T  43211029 tttttgatccctataaaattgggaccttttaagtttagtccttacttaattttaata 43210973  T

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Target: scaffold1191 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1191
Description:

Target: scaffold1191; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 1062 - 1019
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||    
T  1062 taaaattggaaatttttaagtttagtccttacttaattttaata 1019  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 22068493 - 22068450
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| ||||||| ||||||||||||||||||||||| ||||    
T  22068493 taaaattggaaacttctaagtttagtccttacttaattttaata 22068450  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 38499683 - 38499640
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||||    
T  38499683 taaaatttggaacttctaagtttagtccttacttaattttaata 38499640  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 28448277 - 28448333
Alignment:
Q  235 tttttgaatcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||||| | ||| ||||||| | ||||| ||||||||||||||||||||||| ||||    
T  28448277 tttttggaccctataaaattgggaacttctaagtttagtccttacttaattttaata 28448333  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 55283503 - 55283459
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaataa 292  Q
    ||||||| ||||||| ||||||||||| ||||||||||| |||||    
T  55283503 taaaattggaaacttctaagtttagtctttacttaattttaataa 55283459  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 4327996 - 4327949
Alignment:
Q  244 cctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||| | | ||||||||||||||||||||||||||| ||||    
T  4327996 cctgtaaaattgggaccttttaagtttagtccttacttaattttaata 4327949  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 7439615 - 7439572
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| ||||||| |||||||| |||||||||||||||||||    
T  7439615 taaaattggaaacttataagtttaatccttacttaatttaaata 7439572  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 13371895 - 13371938
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||    
T  13371895 taaaattggaaacttttaagtttaatccttacttaattttaata 13371938  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 37592787 - 37592830
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||||||  |||||||||||||||||||||||||||||| ||||    
T  37592787 taaaattgaaaacttttaagtttagtccttacttaattttaata 37592830  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 40364786 - 40364829
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||    
T  40364786 taaaattggaaacttttaggtttagtccttacttaattttaata 40364829  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 13324599 - 13324562
Alignment:
Q  185 taaaaataatggttagatatgtttttggtctctataaa 222  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  13324599 taaaaataagggttaaatatgtttttggtctctataaa 13324562  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 291
Target Start/End: Complemental strand, 35498936 - 35498903
Alignment:
Q  258 aacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||||||||||||||||||||||| ||||    
T  35498936 aacttttaagtttagtccttacttaattttaata 35498903  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 40365284 - 40365227
Alignment:
Q  234 atttttgaatcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    ||||||||  ||| ||||||||| | |||||||||||| |||||||||||||| ||||    
T  40365284 atttttgatccctataaaatttggatcttttaagtttactccttacttaattttaata 40365227  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 41120636 - 41120692
Alignment:
Q  235 tttttgaatcctgtaaaatttgaaacttttaagtttagtccttacttaatttaaata 291  Q
    |||||||  ||| ||||||| | | ||||||||||||||||||||||||||| ||||    
T  41120636 tttttgatccctataaaattgggaccttttaagtttagtccttacttaattttaata 41120692  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 42274199 - 42274239
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaa 288  Q
    ||||||| | ||||| |||||||||||||||||||||||||    
T  42274199 taaaattaggaacttctaagtttagtccttacttaatttaa 42274239  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 123527 - 123487
Alignment:
Q  248 taaaatttgaaacttttaagtttagtccttacttaatttaa 288  Q
    ||||||| ||| ||||||||||||||||||||||| |||||    
T  123527 taaaattggaaccttttaagtttagtccttacttattttaa 123487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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