View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15377_high_3 (Length: 268)

Name: NF15377_high_3
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15377_high_3
NF15377_high_3
[»] chr8 (4 HSPs)
chr8 (81-255)||(42701095-42701270)
chr8 (1-47)||(42701496-42701542)
chr8 (44-72)||(14548080-14548108)
chr8 (44-72)||(34012210-34012238)
[»] chr7 (1 HSPs)
chr7 (102-141)||(42550996-42551035)
[»] chr6 (1 HSPs)
chr6 (44-72)||(32869836-32869864)
[»] chr5 (2 HSPs)
chr5 (44-72)||(16115246-16115274)
chr5 (44-72)||(33149552-33149580)
[»] chr3 (2 HSPs)
chr3 (44-72)||(33644358-33644386)
chr3 (44-72)||(48587015-48587043)
[»] chr1 (1 HSPs)
chr1 (103-143)||(25164047-25164087)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 42701270 - 42701095
Alignment:
Q  81 ttattcatgatcatgagtgt-atgctttttaaaacaacttcccatgtaccccaccacttcccattccgttggaattgaggtttatgattggccaattgct 179  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42701270 ttattcatgatcatgagagttatgctttttaaaacaacttcccatgtaccccaccacttctcattccgttggaattgaggtttatgattggccaattgct 42701171  T
Q  180 agtttgtgaaactttcgcttggtatagcacacctcttgcattttttaatcaccgtagatatttcctccagaataat 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42701170 agtttgtgaaactttcgcttggtatagcacacctcttgcattttttaatcaccgtagatatttcctccagaataat 42701095  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42701542 - 42701496
Alignment:
Q  1 acttgaatgttgctctataggaaaatagatgattgcattttggaaaa 47  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  42701542 acttgaatgttgctctatgggaaaatagatgattgcattttggaaaa 42701496  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 14548108 - 14548080
Alignment:
Q  44 aaaagagtaatgatacatagacacccttt 72  Q
    |||||||||||||||||||||||||||||    
T  14548108 aaaagagtaatgatacatagacacccttt 14548080  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 34012210 - 34012238
Alignment:
Q  44 aaaagagtaatgatacatagacacccttt 72  Q
    |||||||||||||||||||||||||||||    
T  34012210 aaaagagtaatgatacatagacacccttt 34012238  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 42551035 - 42550996
Alignment:
Q  102 tgctttttaaaacaacttcccatgtaccccaccacttccc 141  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  42551035 tgctttctaaaacaacttcccatgtaccccaccacttccc 42550996  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 32869864 - 32869836
Alignment:
Q  44 aaaagagtaatgatacatagacacccttt 72  Q
    |||||||||||||||||||||||||||||    
T  32869864 aaaagagtaatgatacatagacacccttt 32869836  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 16115246 - 16115274
Alignment:
Q  44 aaaagagtaatgatacatagacacccttt 72  Q
    |||||||||||||||||||||||||||||    
T  16115246 aaaagagtaatgatacatagacacccttt 16115274  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 33149552 - 33149580
Alignment:
Q  44 aaaagagtaatgatacatagacacccttt 72  Q
    |||||||||||||||||||||||||||||    
T  33149552 aaaagagtaatgatacatagacacccttt 33149580  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 33644386 - 33644358
Alignment:
Q  44 aaaagagtaatgatacatagacacccttt 72  Q
    |||||||||||||||||||||||||||||    
T  33644386 aaaagagtaatgatacatagacacccttt 33644358  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 48587015 - 48587043
Alignment:
Q  44 aaaagagtaatgatacatagacacccttt 72  Q
    |||||||||||||||||||||||||||||    
T  48587015 aaaagagtaatgatacatagacacccttt 48587043  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 25164087 - 25164047
Alignment:
Q  103 gctttttaaaacaacttcccatgtaccccaccacttcccat 143  Q
    ||||| || ||||||||||||||||||||| ||||||||||    
T  25164087 gctttctataacaacttcccatgtaccccatcacttcccat 25164047  T

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