View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15377_high_5 (Length: 258)
Name: NF15377_high_5
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15377_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 42393225 - 42393069
Alignment:
| Q |
1 |
gttcacacatggctcaaagaagtggattgaagttggtgatcgaaataattaatgggaaactatgatgattattttgactaatttttcctgccatttgggg |
100 |
Q |
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| T |
42393225 |
gttcacacatggctcaaagaagtggattgaagttggtgatcgaaacaattaatgggaaactatgatgattattttgactaatttttcctgccatttgggg |
42393126 |
T |
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| Q |
101 |
ttggatatctgatcttgaggtttttgcattattattttgtgtctccactaagctgga |
157 |
Q |
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| T |
42393125 |
ttggatatctgatcttgaggtttttgcattattattttgtgtctccactaagctgga |
42393069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 42393049 - 42392949
Alignment:
| Q |
140 |
tgtctccactaagctggagtagtctttgtatcttttacnnnnnnn-ctaaaaggagggacattcacatgtttgtcgttctgtacttggtaaatatgtgtt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393049 |
tgtctccactaagctggagtagtctttgtatcttttacaaaaaaaacaaaaaggagggacattcacatgtttgtcgttctgtacttggtaaatatgtgtt |
42392950 |
T |
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| Q |
239 |
g |
239 |
Q |
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| T |
42392949 |
g |
42392949 |
T |
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