View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15377_low_11 (Length: 248)
Name: NF15377_low_11
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15377_low_11 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 103 - 248
Target Start/End: Original strand, 3682974 - 3683119
Alignment:
| Q |
103 |
ttttacaagaggccaaattagttaaaaattgaaggaaaaaatagagggtgacattgaatcattatttgtgtccctatgtttgaattctcccccatgagag |
202 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3682974 |
ttttacaaaaggccaaattagttaaaaattgaaggaaaaaatagagggtgacattgaatcattatttgtgtccctatgtttgaattctcccccatgagag |
3683073 |
T |
|
| Q |
203 |
gttgtttggctggttccatttgcatattcaaactgcaagaggagcc |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3683074 |
gttgtttggctggttccatttgcatcttcaaactgcaagaggagcc |
3683119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 20239106 - 20239063
Alignment:
| Q |
57 |
tgtattgaggggtgtacacaaaagagtggtctatctatattttc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20239106 |
tgtattgaggggtgtacataaaagagtggtctatctatattttc |
20239063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 26771561 - 26771459
Alignment:
| Q |
1 |
cctctgagaaagagaaagacagacttttttgttttaataaaagccacgtnnnnnnntgtattgaggggtgtacacaaaagagtggtctatctatattttc |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26771561 |
cctctgagaaagagaaagacagaattttttgttttaataaaagccacgtgggggg-tgtattgaggggtgtacacaaaagagtggtctatctatattttc |
26771463 |
T |
|
| Q |
101 |
tctt |
104 |
Q |
| |
|
|||| |
|
|
| T |
26771462 |
tctt |
26771459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 17272696 - 17272662
Alignment:
| Q |
57 |
tgtattgaggggtgtacacaaaagagtggtctatc |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
17272696 |
tgtattgaggggtgtacacaaaagagtggtctatc |
17272662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16880 - 16981
Alignment:
| Q |
1 |
cctctgagaaagagaaagacagacttttttgttttaataaaagccacgtnnnnnnntgtattgaggggtgtacacaaaagagtggtctatctatattttc |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16880 |
cctctgagaaagagaaagacataattttttgttttaataaaagccgcgtgggggg-tgtattgaggggtgtacacaaaagagtggtctatctatattttc |
16978 |
T |
|
| Q |
101 |
tct |
103 |
Q |
| |
|
||| |
|
|
| T |
16979 |
tct |
16981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University