View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15377_low_15 (Length: 236)
Name: NF15377_low_15
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15377_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 218
Target Start/End: Complemental strand, 50557226 - 50557028
Alignment:
| Q |
20 |
ggcataatacaaataatccaactataaaagaagtgtcacactagtttgagcatagaaacaaaatcttccactgtgctttctattactcacttgttctttt |
119 |
Q |
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| T |
50557226 |
ggcataatacaaatgatccaactataaaagaagtgtcacactagtttgagcatagaaacaaaatcttccactgtgctttctattactcacttgttctttt |
50557127 |
T |
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| Q |
120 |
ccaatcttattattttcaaacaacaaaggagtattcaagagnnnnnnnnnnnnnnnnnnactcaaagtagtatttaagagttatatcatagtgtttttg |
218 |
Q |
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| T |
50557126 |
ccaatcttatttttttcaaataacaaagtagtattcaagagttttttactttttattttactcaaagtagtatttaagagttatatcatagtgtttttg |
50557028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 50818701 - 50818559
Alignment:
| Q |
18 |
agggcataatacaaataatccaactataaaagaagtgtcacactagtttgagcatagaaacaaaatcttccactgtgctttctattactcacttgttctt |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50818701 |
agggcataatacaaatgatccaactataaaagaagtgtcacactagtttgagcatagaaacaaaatcttccactgtgctttctattactcacttgttttc |
50818602 |
T |
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| Q |
118 |
ttccaatcttattattttcaaacaacaaaggagtattcaagag |
160 |
Q |
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| T |
50818601 |
ttccaatattatttttgtcaaataataaagtaatattcaagag |
50818559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 50857163 - 50857305
Alignment:
| Q |
18 |
agggcataatacaaataatccaactataaaagaagtgtcacactagtttgagcatagaaacaaaatcttccactgtgctttctattactcacttgttctt |
117 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50857163 |
agggcataatacaaatgatccaactataaaagaagtgtcacactagtttgagcatagaaacaaaatcttccactgtgctttctattactcacttgttttc |
50857262 |
T |
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| Q |
118 |
ttccaatcttattattttcaaacaacaaaggagtattcaagag |
160 |
Q |
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||||||| ||||| || ||||| || |||| | |||||||||| |
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| T |
50857263 |
ttccaatattatttttgtcaaataataaagtaatattcaagag |
50857305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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