View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15377_low_2 (Length: 501)
Name: NF15377_low_2
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15377_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Complemental strand, 41878876 - 41878405
Alignment:
| Q |
18 |
cagacttcggcggtccgcggccaatgcctatgccgtcgacagggtggcggtccagacgttggacaccgttgttgatgagtttcttctccacatgtttgat |
117 |
Q |
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| T |
41878876 |
cagacttcggcggtccacggccaatgcctatgccgtcgacagggtggcggtccagacgttggacaccgttgttgatgagtttcttctccacatgtttgat |
41878777 |
T |
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| Q |
118 |
tgtgtctatgttgtgtgtgttgagttctgttttttcaactctcttttttccttcttcgtcgtgactcactgctcttattgttaccgtctcttgtttctcg |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41878776 |
tgtgtctatgttgtgtgtgtttagttctgttttttcaactctcttttttccttcttcgtcgtgactcactgctcttattgttaccgtctcttgtttctcg |
41878677 |
T |
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| Q |
218 |
tcgattggcttcattgttgcttgctacaaagaaag-ttatttatgtttatgatgtatgtcataaaatacaaagtgtaaggtggtttttatttataggagg |
316 |
Q |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |
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| T |
41878676 |
tcgattggcttcattgctgcttgctacaaagaaagtttatttatgtttatgatgtatgttatacaatacaaagtgcaaggtggtttttatttataggagg |
41878577 |
T |
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| Q |
317 |
tttatacaatacaaagttagaatgtgctggaagtaatataggttgagaattcttgtatttgctagaaaattctatgctacgtgacacagctatgcactgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41878576 |
tttatacaatacaaagttagaatgtgctggaagtaatataggttgagaattcttgtatttgctagaaaattctatgctacgtgacacagctatgcactgt |
41878477 |
T |
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| Q |
417 |
cacgtgtaagtaataagattgatcatattaattaacatgttcattcattttctacacactatttgggtcttc |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41878476 |
cacgtgtaagtaataagattgatcatattaattaacatgttcattcattttctacacactatttgggtcttc |
41878405 |
T |
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