View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15377_low_3 (Length: 489)
Name: NF15377_low_3
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15377_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 32268274 - 32268004
Alignment:
| Q |
1 |
gtaatctatagttcaataataatgattgaaaaattattttttcggcgaagaattgaacgtgtgttgttctgaacaatctgtcttaaaataaaacacatta |
100 |
Q |
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| T |
32268274 |
gtaatctatagttcaataataatgattgaaaaatgattttttcggcgaagaattgaacgtgtgttgttctgaacaatttgtcttaaaataaaacacatta |
32268175 |
T |
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| Q |
101 |
accacttcaactaaatctcgtattttgaaagaagagaataataaccttttaatgctggttgttttacaaatagagatggacgaaaaagttgctactttgt |
200 |
Q |
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| T |
32268174 |
accacttcaactaaatctcgtattttgaaagaagagaataataaccttttaatgctggttgttttacaaatagagatggacgaaaaagttgcaactttgt |
32268075 |
T |
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| Q |
201 |
tgaatttataaaattatatgttttcannnnnnnncttggttcttgaattgtgatacgaaaaattacttgaa |
271 |
Q |
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| T |
32268074 |
tgaatttataaaattatatgttttcattttttttcttggttcttgaattgtgatacgaaaaattacttgaa |
32268004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 268 - 470
Target Start/End: Complemental strand, 32266030 - 32265828
Alignment:
| Q |
268 |
tgaaaaattaaattcaatcatgaaaatatatatcgtttcttcttgaatcttctgcaaacaatcttattttcacataaatatatcataatttctagttcca |
367 |
Q |
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| T |
32266030 |
tgaaaaattaaattcaatcatgaaaatatatatcgtttcttcttgaatcttctgcaaacaatcttattttcacataaatatatcataatttctagttcca |
32265931 |
T |
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| Q |
368 |
tctatattccatatgcatgggatggttctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgttaa |
467 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32265930 |
tctatattccatatgcatggggtggttctgcatccttcaacctctttacagtcaaataggaattagagtcagaaacatatagtaaagatcagattgctaa |
32265831 |
T |
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| Q |
468 |
tag |
470 |
Q |
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||| |
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| T |
32265830 |
tag |
32265828 |
T |
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