View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15377_low_4 (Length: 444)
Name: NF15377_low_4
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15377_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 435
Target Start/End: Complemental strand, 3531903 - 3531487
Alignment:
| Q |
19 |
taataagccctctcgacctaataattcaatcatacacgcatagtgcattgctcgaggcttaatgttatgatcttgactcattgactgaaaaatctcccaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531903 |
taataagccctctcgacctaataattcaatcatacacgcatagtgcattgctcgaggcttaatgttatgatcttgactcattgactgaaaaatctcccaa |
3531804 |
T |
|
| Q |
119 |
cctctttctgataatcctgaatagctacaggcagataagacagcaagaaaagtgacatggttgggagtcatattttcttgaagcattttctcaaacattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531803 |
cctctttctgataatcctgaatagctacaggcagataagacagcaagaaaagtgacatggttgggagtcatattttcttgaagcattttctcaaacattt |
3531704 |
T |
|
| Q |
219 |
ctattgcctcttctccccgaccatgatgaccatatccagcaatcaatgcattccaagatatgatattcttccggtgcatcttgtcgaaaacatgtcgagc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531703 |
ctattgcctcttctccccgaccatgatgaccatatccagcaatcaatgcattccaagatatgatattcttccggtgcatcttgtcgaaaacatgtcgagc |
3531604 |
T |
|
| Q |
319 |
attttccatcctcccccatttgctgtagaagttaacaagcgccgagttcgccaccaaatctgtgccaaagccacgacgaactaatgcagcatgaccttgc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531603 |
attttccatcctcccccatttgctgtagaagttaacaagcgccgagttcgccaccaaatctgtgccaaagccacgacgaactaatgcagcatgaccttgc |
3531504 |
T |
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| Q |
419 |
tttccgtgttctgatga |
435 |
Q |
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|||||||||||| |||| |
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| T |
3531503 |
tttccgtgttctaatga |
3531487 |
T |
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