View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15377_low_6 (Length: 320)
Name: NF15377_low_6
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15377_low_6 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 35 - 320
Target Start/End: Original strand, 108667 - 108952
Alignment:
| Q |
35 |
tatctggtgtgcgtcattctttaaagctttctttacctgtttgaaactcaattcagtgctaaaaatgaaaggattcagtcatcactaatatttgattcag |
134 |
Q |
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| T |
108667 |
tatctggtgtgcgtcattctttaaagctttctttacctgtttgaaactcaattcagtgctaaaaatgaaaggattcagtcatcactaatatttgattcag |
108766 |
T |
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| Q |
135 |
ggttgtttatttaatacatacagaaaaaggtaattaagtgaaaaatgcagaaaaatttcaacaatttagaggttaacttcagtataacttttattacttt |
234 |
Q |
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| T |
108767 |
ggttgtttatttaatacatacagaaaaaggtaattaagagaaaaatgcagaaaaatttcaacaatttagaggttaacttcagtataacttttattacttt |
108866 |
T |
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| Q |
235 |
tgcactttttaacatatattcggcttctggacccaatatgcaaaacatggtttcacagatgttttgctactgggtaacttgaatgg |
320 |
Q |
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| T |
108867 |
tgcactttttaacatatattcggcttctggacccaatatgcaaaacatggtttcagagatgttttgctactgggtaacttgaatgg |
108952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 2708331 - 2708414
Alignment:
| Q |
66 |
tttacctgtttgaaactcaattcagtgctaaaaatgaaaggattcagtcatcactaatatttgattcagggttgtttatttaat |
149 |
Q |
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| T |
2708331 |
tttacctgtttgaaactcaattcagtgctacatatgaaaagattcagtcctcattgatatccgattcaaggttgtttatttaat |
2708414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 89372 - 89457
Alignment:
| Q |
36 |
atctggtgtgcgtcattctttaaagctttctttacctgtttgaaactcaattcagtgctaaaaatgaaaggattcagtcatcactaa |
122 |
Q |
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| T |
89372 |
atctgatgtgccacattcattaaagctttatttacttgtttgaaactcaattcaatgct-aaaatgaaaggattcagtcatcgctaa |
89457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 303
Target Start/End: Original strand, 89964 - 90058
Alignment:
| Q |
210 |
acttcagtataacttttattacttttgcactttttaacatatattcggcttctgga-cccaatatgcaaaacatggtttcacagatgttttgcta |
303 |
Q |
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| T |
89964 |
acttcagtataacttttattatttctgtaccttttaacacatattcagcctctggaccccagtacgtaacacatggtttcactgaggttttgcta |
90058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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