View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15377_low_8 (Length: 268)
Name: NF15377_low_8
Description: NF15377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15377_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 42701270 - 42701095
Alignment:
| Q |
81 |
ttattcatgatcatgagtgt-atgctttttaaaacaacttcccatgtaccccaccacttcccattccgttggaattgaggtttatgattggccaattgct |
179 |
Q |
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| T |
42701270 |
ttattcatgatcatgagagttatgctttttaaaacaacttcccatgtaccccaccacttctcattccgttggaattgaggtttatgattggccaattgct |
42701171 |
T |
|
| Q |
180 |
agtttgtgaaactttcgcttggtatagcacacctcttgcattttttaatcaccgtagatatttcctccagaataat |
255 |
Q |
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| T |
42701170 |
agtttgtgaaactttcgcttggtatagcacacctcttgcattttttaatcaccgtagatatttcctccagaataat |
42701095 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42701542 - 42701496
Alignment:
| Q |
1 |
acttgaatgttgctctataggaaaatagatgattgcattttggaaaa |
47 |
Q |
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| T |
42701542 |
acttgaatgttgctctatgggaaaatagatgattgcattttggaaaa |
42701496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 14548108 - 14548080
Alignment:
| Q |
44 |
aaaagagtaatgatacatagacacccttt |
72 |
Q |
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| T |
14548108 |
aaaagagtaatgatacatagacacccttt |
14548080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 34012210 - 34012238
Alignment:
| Q |
44 |
aaaagagtaatgatacatagacacccttt |
72 |
Q |
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|
| T |
34012210 |
aaaagagtaatgatacatagacacccttt |
34012238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 42551035 - 42550996
Alignment:
| Q |
102 |
tgctttttaaaacaacttcccatgtaccccaccacttccc |
141 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
42551035 |
tgctttctaaaacaacttcccatgtaccccaccacttccc |
42550996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 32869864 - 32869836
Alignment:
| Q |
44 |
aaaagagtaatgatacatagacacccttt |
72 |
Q |
| |
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| T |
32869864 |
aaaagagtaatgatacatagacacccttt |
32869836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 16115246 - 16115274
Alignment:
| Q |
44 |
aaaagagtaatgatacatagacacccttt |
72 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
16115246 |
aaaagagtaatgatacatagacacccttt |
16115274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 33149552 - 33149580
Alignment:
| Q |
44 |
aaaagagtaatgatacatagacacccttt |
72 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
33149552 |
aaaagagtaatgatacatagacacccttt |
33149580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Complemental strand, 33644386 - 33644358
Alignment:
| Q |
44 |
aaaagagtaatgatacatagacacccttt |
72 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
33644386 |
aaaagagtaatgatacatagacacccttt |
33644358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 48587015 - 48587043
Alignment:
| Q |
44 |
aaaagagtaatgatacatagacacccttt |
72 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
48587015 |
aaaagagtaatgatacatagacacccttt |
48587043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 25164087 - 25164047
Alignment:
| Q |
103 |
gctttttaaaacaacttcccatgtaccccaccacttcccat |
143 |
Q |
| |
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||||| || ||||||||||||||||||||| |||||||||| |
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| T |
25164087 |
gctttctataacaacttcccatgtaccccatcacttcccat |
25164047 |
T |
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