View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15378_high_3 (Length: 521)
Name: NF15378_high_3
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 472; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 23 - 506
Target Start/End: Original strand, 1373915 - 1374398
Alignment:
| Q |
23 |
cggccaaggtcacagtcacaaatttgtatttaaaacccttttaatttgtgtgtggccgatgtggcctcaattgctgtcgaactgcggtttcaataacatc |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1373915 |
cggccaaggtcacagtcacaaatttgtatttaaaacccttttaatttgtgtgtggccgatgtggcctcaattgctgtcgaactgcggtttcaataacatc |
1374014 |
T |
|
| Q |
123 |
aaaaaccgttatgtcgcgaccctgattgtggtcacggacctttatttaaaatccatttgagttttgatggttaacatatgtttgttttgacttctacttg |
222 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374015 |
aaaaaccgttatgtcgcgaccctgatcgtggtcacggacctttatttaaaatccatttgagttttgatggttaacatatgtttgttttgacttctacttg |
1374114 |
T |
|
| Q |
223 |
cttacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagc |
322 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1374115 |
cttacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagc |
1374214 |
T |
|
| Q |
323 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagtt |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1374215 |
aactgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagtt |
1374314 |
T |
|
| Q |
423 |
caatgcatcagtttcattgcacacacacctgaagtttactaaatttgagtgttaaatcactcttggctaccattggaggaacat |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1374315 |
caatgcatcagtttcattgcacacacacctgaagtttactaaatttgagtgttaaatcactcttggctaccattggaggaacat |
1374398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 225 - 506
Target Start/End: Original strand, 1350659 - 1350940
Alignment:
| Q |
225 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1350659 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
1350758 |
T |
|
| Q |
325 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttca |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1350759 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttca |
1350858 |
T |
|
| Q |
425 |
atgcatcagtttcattgcacacacacctgaagtttactaaatttgagtgttaaatcactcttggctaccattggaggaacat |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |||||||| |||||| |
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|
| T |
1350859 |
atgcatcagtttcattgcacacacacctgcggtctactaaatttgagtgttaaatcactctcagctgccattggaagaacat |
1350940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 225 - 506
Target Start/End: Original strand, 1358565 - 1358846
Alignment:
| Q |
225 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1358565 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
1358664 |
T |
|
| Q |
325 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttca |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1358665 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttca |
1358764 |
T |
|
| Q |
425 |
atgcatcagtttcattgcacacacacctgaagtttactaaatttgagtgttaaatcactcttggctaccattggaggaacat |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||| ||| |||| |||||| |
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|
| T |
1358765 |
atgcatcagtttcattgcacacacacctgaagtttactaagtttgagtatttaatcactctctgctgccactggaagaacat |
1358846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 225 - 471
Target Start/End: Original strand, 1390418 - 1390664
Alignment:
| Q |
225 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1390418 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
1390517 |
T |
|
| Q |
325 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttca |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1390518 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttca |
1390617 |
T |
|
| Q |
425 |
atgcatcagtttcattgcacacacacctgaagtttactaaatttgag |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
1390618 |
atgcatcagtttcattgcacacacacctgatgtttactaaatttgag |
1390664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 225 - 464
Target Start/End: Original strand, 1394664 - 1394903
Alignment:
| Q |
225 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1394664 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
1394763 |
T |
|
| Q |
325 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttca |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
1394764 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagttca |
1394863 |
T |
|
| Q |
425 |
atgcatcagtttcattgcacacacacctgaagtttactaa |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1394864 |
atgcatcagtttcattgcacacacacctgatgtttactaa |
1394903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 225 - 453
Target Start/End: Original strand, 1384313 - 1384541
Alignment:
| Q |
225 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1384313 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
1384412 |
T |
|
| Q |
325 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttca |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1384413 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttca |
1384512 |
T |
|
| Q |
425 |
atgcatcagtttcattgcacacacacctg |
453 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1384513 |
atgcatcagtttcattgcacacacacctg |
1384541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 9e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 232 - 451
Target Start/End: Original strand, 7010315 - 7010534
Alignment:
| Q |
232 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
331 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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|
| T |
7010315 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
7010414 |
T |
|
| Q |
332 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatc |
431 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||||||||| ||||||||||| || ||||| |
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|
| T |
7010415 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
7010514 |
T |
|
| Q |
432 |
agtttcattgcacacacacc |
451 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
7010515 |
agtttcattgctcacacacc |
7010534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 232 - 451
Target Start/End: Original strand, 7007237 - 7007456
Alignment:
| Q |
232 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
331 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
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|
| T |
7007237 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
7007336 |
T |
|
| Q |
332 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggatttgacaacgttcgtcaagttcaatgcatc |
431 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||||||||| ||||||||||| || ||||| |
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|
| T |
7007337 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
7007436 |
T |
|
| Q |
432 |
agtttcattgcacacacacc |
451 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
7007437 |
agtttcattgctcacacacc |
7007456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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