View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_high_5 (Length: 440)
Name: NF15378_high_5
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_high_5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 252 - 440
Target Start/End: Complemental strand, 31821519 - 31821330
Alignment:
| Q |
252 |
tgcaagaagtctgtt-gactaatttaaacaccaaaagacaaaaacatgaaagattacagccattcacttttagaagcatctaagtttggccactaaagct |
350 |
Q |
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| T |
31821519 |
tgcaagaagtctgtttgactaatttaaacaccaaaagacaaaaacatgaaagattacaaccgttcacttttagaagcatctaagtttggccactaaagct |
31821420 |
T |
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| Q |
351 |
ttctaactagtctttttgggaagaaatataaaatttgcattacacgagatgagaagacaattttctcatcatcaaaatattaaaagtccc |
440 |
Q |
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| T |
31821419 |
ttctaactagtcttttcgggaagaaatataaaatttgcattacacgagatgagaagacaattttctcatcatcaaaatattaaaagtccc |
31821330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 31821570 - 31821520
Alignment:
| Q |
21 |
tgatccgacgagtatcaagatttaaaccaattaaatttaatcattataaaa |
71 |
Q |
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| T |
31821570 |
tgatccgatgagtatgaagatataaaccaattaaatttaatcattataaaa |
31821520 |
T |
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