View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_high_9 (Length: 333)
Name: NF15378_high_9
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 7653226 - 7652920
Alignment:
| Q |
19 |
ataggtaaattgattttcgtttttgattttgaatctgtgttgattactgctagaaggaaaataaacagtatatgtattgttgtagtttg-tttcagtgct |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| || |||||| ||||| |||| |
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| T |
7653226 |
ataggtaaattgattttcgtttttgattttgaatctgtgttgattactgttagaaggaaaataaatagtatatttattgctgcagtttggtttcaatgct |
7653127 |
T |
|
| Q |
118 |
aactgcaatttcgtactgtcaagttagtgtggttcatcggagaataat---gttagagtgaaacaagcatgaatcataacttatggaacactgatactgt |
214 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7653126 |
aactgcaatttcgtactgtcaagttagtgtggttcatcatagaataataatgtaagagtgaaacaagcatgaatcataacttatggaacactgatacagt |
7653027 |
T |
|
| Q |
215 |
aggcacaaacactggattcaacaccgatattgacatgtagacattaataataattcgagaaaatagaagtaattcaatgtaattacttatattggttttg |
314 |
Q |
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|| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7653026 |
agacacaaacaccggattcaacaccgatattgacaggtagacattaataataattcgagaaaatagaagtaattcaatgtaattacttatattggttttg |
7652927 |
T |
|
| Q |
315 |
tcttcat |
321 |
Q |
| |
|
||||||| |
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|
| T |
7652926 |
tcttcat |
7652920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 7422147 - 7422207
Alignment:
| Q |
239 |
cgatattgacatgtagacattaataataattcgagaaaatagaagtaattcaatgtaatta |
299 |
Q |
| |
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||||||||||| |||||||| |||||||| |||||||||||||| ||| |||||||||| |
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| T |
7422147 |
cgatattgacacatagacatttgtaataatttgagaaaatagaagtgattgaatgtaatta |
7422207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 23 - 257
Target Start/End: Original strand, 33172378 - 33172613
Alignment:
| Q |
23 |
gtaaattgattttcgtttttgattttgaatctgtgttgattactgctagaaggaaaataaacagtatatgtattgttgtagtttg-tttcagtgctaact |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||| |||||||||||||| |
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| T |
33172378 |
gtaaattgattttcgtttttgattttgaatctgtgttgattattgttagaaggaaaataaacagtatatgtattgctgcagtttggtttcagtgctaact |
33172477 |
T |
|
| Q |
122 |
gcaatttcgtactgtcaagttagtgtggttcatcggagaataatgttagagtgaaacaagcatgaatcataacttatggaacactgatactgtaggcaca |
221 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |||| |
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|
| T |
33172478 |
gcaatttcgtactgtcaagttagtgtggttcatcaaagaataatgtaagagtgaaacaagcatgaatcataacttatggaatactgatacagtagacaca |
33172577 |
T |
|
| Q |
222 |
aacactggattcaacaccgatattgacatgtagaca |
257 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||| |
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|
| T |
33172578 |
aacaccggattcaacactgatattgacatgtagaca |
33172613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 99 - 321
Target Start/End: Complemental strand, 40646943 - 40646720
Alignment:
| Q |
99 |
tgtagtttgttt-cagtgctaactgcaatttcgtactgtcaagttagtgtggttcatcggagaataatgttagagtgaaacaagcatgaatcataactta |
197 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40646943 |
tgtagtttgttttcagtgctaactgccatttcgtactgtcaagttagtgtggttcatcagagaataatgttagagtgaaacaagcatgaatcataactta |
40646844 |
T |
|
| Q |
198 |
tggaacactgatactgtaggcacaaacactggattcaacaccgatattgacatgtagacattaataataattcgagaaaatagaagtaattcaatgtaat |
297 |
Q |
| |
|
||||||| ||||||||||| ||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
40646843 |
tggaacattgatactgtagacacaaacaccgaattcaacaccgatattgacatgtcgacattaataataattcgagaaaataaaagtaattcaatgtaat |
40646744 |
T |
|
| Q |
298 |
tacttatattggttttgtcttcat |
321 |
Q |
| |
|
|||||||| | ||||||||||||| |
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|
| T |
40646743 |
tacttatactagttttgtcttcat |
40646720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 107 - 321
Target Start/End: Original strand, 40130058 - 40130270
Alignment:
| Q |
107 |
gtttcagtgctaactgcaatttcgtactgtcaagttagtgtggttcatcggagaataatgttagagtgaaacaagcatgaatcataacttatggaacact |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||||| ||| |||||||| |
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|
| T |
40130058 |
gtttcagtgctaactgcaatttggtactgtcaagttagtgtggttcatcagagaataacgtaagagtgaaacaagcataaatcatatctt--ggaacact |
40130155 |
T |
|
| Q |
207 |
gatactgtaggcacaaacactggattcaacaccgatattgacatgtagacattaataataattcgagaaaatagaagtaattcaatgtaattacttatat |
306 |
Q |
| |
|
||||| |||| ||||||||||||| || ||| |||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||||||||| ||||| |
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|
| T |
40130156 |
gatacagtagacacaaacactggactcgacatcgatattgacatgtagacatcaataataatttgagaaaataaaagcaattcaatgtaattacgtatat |
40130255 |
T |
|
| Q |
307 |
tggttttgtcttcat |
321 |
Q |
| |
|
||||||||||||||| |
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|
| T |
40130256 |
tggttttgtcttcat |
40130270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 21902997 - 21902864
Alignment:
| Q |
19 |
ataggtaaattgattttcgtttttgattttgaatctgtgttgattactgctagaaggaaaataaacagtatatgtattgttgtagttt-gtttcagtgct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
21902997 |
ataggtaaattgattttcgtttttgattttgaat--gtgttgattactgttagaaggaaaataaacagtatatgtattgctgtagtttggtttcagtgct |
21902900 |
T |
|
| Q |
118 |
aactgcaatttcgtactgtcaagttagtgtggttca |
153 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||| |
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|
| T |
21902899 |
aactgcaatttcatactgtcaatttagtgtggttca |
21902864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 10666690 - 10666635
Alignment:
| Q |
243 |
attgacatgtagacattaataataattcgagaaaatagaagtaattcaatgtaatt |
298 |
Q |
| |
|
||||| || |||||| ||||||||||| |||||||||||||||||| |||| |||| |
|
|
| T |
10666690 |
attgaaatatagacactaataataatttgagaaaatagaagtaattgaatgaaatt |
10666635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 29236253 - 29236300
Alignment:
| Q |
249 |
atgtagacattaataataattcgagaaaatagaagtaattcaatgtaa |
296 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
29236253 |
atgtagacactaataataatttgagaaaatagaagtgattgaatgtaa |
29236300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 39500915 - 39500882
Alignment:
| Q |
255 |
acattaataataattcgagaaaatagaagtaatt |
288 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
39500915 |
acattaataataatttgagaaaatagaagtaatt |
39500882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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