View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_10 (Length: 411)
Name: NF15378_low_10
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 310
Target Start/End: Complemental strand, 11655214 - 11654908
Alignment:
| Q |
4 |
catgaaatttgacactagtttttgcctagaattcaactttatctagttataaatattaataaatcattattgtctaataagtcactgtattcatgcaaaa |
103 |
Q |
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||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11655214 |
catgaaatttgtctctagtttttgtctagaattcaactttatctagttataaatattaataaatcattattgtctaataagtcactgtattcatgcaaaa |
11655115 |
T |
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| Q |
104 |
attgatgtaattgaatccaagtttaacgcaaggcaagacccttcaatgcaaattttgagatgtaaaaatatatataaagacttactacaaattggtttgc |
203 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11655114 |
attgatgtaattgattccaagtttaacgcaaggcaagacccttcaatgcaaattttgagatgtaaaaatatatataaagacttactacaaattggtttgc |
11655015 |
T |
|
| Q |
204 |
aagtgttgcagtcaacctcacatccacctcggcatgcattaggacaggcatgttccatattgtaacattttgggtagttcttgttcccacatctagcggt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11655014 |
aagtgttgcagtcaacctcacatccacctcggcatgcattaggacaggcatgttccatattgtaacattttgggtagttcttgttcccacatctagcggt |
11654915 |
T |
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| Q |
304 |
tttgtgc |
310 |
Q |
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||||||| |
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| T |
11654914 |
tttgtgc |
11654908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 310
Target Start/End: Complemental strand, 11668982 - 11668676
Alignment:
| Q |
4 |
catgaaatttgacactagtttttgcctagaattcaactttatctagttataaatattaataaatcattattgtctaataagtcactgtattcatgcaaaa |
103 |
Q |
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||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11668982 |
catgaaatttgtctctagtttttgtctagaattcaactttatctagttataaatattaataaatcattattgtctaataagtcactgtattcatgcaaaa |
11668883 |
T |
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| Q |
104 |
attgatgtaattgaatccaagtttaacgcaaggcaagacccttcaatgcaaattttgagatgtaaaaatatatataaagacttactacaaattggtttgc |
203 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11668882 |
attgatgtaattgattccaagtttaacgcaaggcaagacccttcaatgcaaattttgagatgtaaaaatatatataaagacttactacaaattggtttgc |
11668783 |
T |
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| Q |
204 |
aagtgttgcagtcaacctcacatccacctcggcatgcattaggacaggcatgttccatattgtaacattttgggtagttcttgttcccacatctagcggt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11668782 |
aagtgttgcagtcaacctcacatccacctcggcatgcattaggacaggcatgttccatattgtaacattttgggtagttcttgttcccacatctagcggt |
11668683 |
T |
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| Q |
304 |
tttgtgc |
310 |
Q |
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||||||| |
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| T |
11668682 |
tttgtgc |
11668676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 7344761 - 7344870
Alignment:
| Q |
89 |
tgtattcatgcaaaaattgatgtaattgaatccaagtttaacgcaaggcaagacccttcaatgcaaattttgagatgtaaaaatatatataaagacttac |
188 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||| | ||| | || |||||||||||||||| |||| || |||||| |||||||| |
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| T |
7344761 |
tgtattcttgcaaaaattgatgtaattgattccaagtttaatgtaag------actttaaatgcaaattttgagacgtaacaaaatatat--agacttac |
7344852 |
T |
|
| Q |
189 |
tacaaattggtttgcaag |
206 |
Q |
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|||||||||||||||| |
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| T |
7344853 |
agcaaattggtttgcaag |
7344870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 11663695 - 11663642
Alignment:
| Q |
69 |
attattgtctaataagtcactgtattcatgcaaaaattgatgtaattgaatcca |
122 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||| ||| |||| |
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| T |
11663695 |
attattatctaataaaccactgtattcatgcaaaaattgatgtaactgattcca |
11663642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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