View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_12 (Length: 395)
Name: NF15378_low_12
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 43132741 - 43133121
Alignment:
| Q |
1 |
tgtagatagtgtaccatggttgcacaaatagtcaaatacttgtagatattcctgcnnnnnnnntctataatactaactaaaaacatttaaaataaattcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43132741 |
tgtagatagtgtaccatggttgcacaaatagtcaaatacttgtagatattcctgcaaaaaaattctataatactaactaaaaacatttaaaataaattcc |
43132840 |
T |
|
| Q |
101 |
cctgctttggctaggattgagaattttcta----tgtccttcacaatttcactaatagcagttttaaccatatttacaggattatatcccacaaagactg |
196 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132841 |
cctgctttggctaggattgagaattttctatctatgtccttcacaatttcactaatagcagttttaaccatatttacaggattatatcccacaaagactg |
43132940 |
T |
|
| Q |
197 |
caaaaatctgaagatccagaatcgccgccatcgagttacggtaacatattcttaaatgaagatgaattcaacaagcctcccccagaattaccaccacaaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132941 |
caaaaatctgaagatccagaatcgccgccatcgagttacgataacatattcttaaatgaagatgaattcaacaagcctcccccagaattaccaccacaaa |
43133040 |
T |
|
| Q |
297 |
taccagtgacaataacacaagaagaggcttcaacaagcaatattgatcaagtccctagttctacacatgtggatctaaatc |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43133041 |
taccagtgacaataacacaagaagaggcttcaacaagcaatattgatcaagtccctagttctacacatgtggatctaaatc |
43133121 |
T |
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