View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_13 (Length: 386)
Name: NF15378_low_13
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 11669067 - 11669428
Alignment:
| Q |
10 |
caatgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagaca |
109 |
Q |
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| T |
11669067 |
caatgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggagatggaatcactttttacttccatggcaagaaagaca |
11669166 |
T |
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| Q |
110 |
acaacttctgccttgtttctgataacaacctccacatcaatgctcatttcataggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatc |
209 |
Q |
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|||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11669167 |
acaacttctgccttgtttctgacaaaaacctacacatcaatgctcatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatc |
11669266 |
T |
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| Q |
210 |
cattgttattctctttgacaatcaccaactcttccttggagcccaaaaaacagcaacatgggatgactctgtggatcgtcttgccctctcctttgacggc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
11669267 |
cattgttattctctttgacaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgtggatcgccttgccatctcctttgacgga |
11669366 |
T |
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| Q |
310 |
gaacccatcaccctccacgaatctgaaggtgcaaaatgggaatcatccggcgtgtcctttgt |
371 |
Q |
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| T |
11669367 |
gaacccatcaccctccacgaatctgaaggtgcgaaatgggaatcatccggcgtgtcctttgt |
11669428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 11655299 - 11655660
Alignment:
| Q |
10 |
caatgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagaca |
109 |
Q |
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| T |
11655299 |
caatgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggagatggaatcactttttacttccatggcaagaaagaca |
11655398 |
T |
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| Q |
110 |
acaacttctgccttgtttctgataacaacctccacatcaatgctcatttcataggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatc |
209 |
Q |
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|||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11655399 |
acaacttctgccttgtttctgacaaaaacctacacatcaatgctcatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatc |
11655498 |
T |
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| Q |
210 |
cattgttattctctttgacaatcaccaactcttccttggagcccaaaaaacagcaacatgggatgactctgtggatcgtcttgccctctcctttgacggc |
309 |
Q |
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| T |
11655499 |
cattgttattctctttgacaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgtggatcgccttgccatctcatttgacgga |
11655598 |
T |
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| Q |
310 |
gaacccatcaccctccacgaatctgaaggtgcaaaatgggaatcatccggcgtgtcctttgt |
371 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11655599 |
gaacccatcaccctccacgaatctgaaggtgcgaaatgggaatcatccggcgtgtcctttgt |
11655660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 13 - 371
Target Start/End: Original strand, 11663759 - 11664117
Alignment:
| Q |
13 |
tgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaaca |
112 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11663759 |
tgaattgcagcttgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttactttcatggcaagaaagacaaca |
11663858 |
T |
|
| Q |
113 |
acttctgccttgtttctgataacaacctccacatcaatgctcatttcataggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatccat |
212 |
Q |
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| T |
11663859 |
acttctgccttgtttctgataacaacctccacatcaatgctcatttcataggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatccat |
11663958 |
T |
|
| Q |
213 |
tgttattctctttgacaatcaccaactcttccttggagcccaaaaaacagcaacatgggatgactctgtggatcgtcttgccctctcctttgacggcgaa |
312 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||| || ||||||||||||||||||||||| || |
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| T |
11663959 |
tgttattctctttgacaatcaccaacttttccttggtgcccaaaaaacatcaacatgggatgattctgtagaccgtcttgccctctcctttgacggtgag |
11664058 |
T |
|
| Q |
313 |
cccatcaccctccacgaatctgaaggtgcaaaatgggaatcatccggcgtgtcctttgt |
371 |
Q |
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|||||||| ||| ||||||| |||||||| |||||||||||||| || || |||||||| |
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| T |
11664059 |
cccatcactctcaacgaatcagaaggtgcgaaatgggaatcatctggggtatcctttgt |
11664117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 353
Target Start/End: Complemental strand, 7344738 - 7344397
Alignment:
| Q |
12 |
atgaattgcagagtgtgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaac |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7344738 |
atgaattgcagcgtgtgacaaaccaggagcggtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaac |
7344639 |
T |
|
| Q |
112 |
aacttctgccttgtttctgataacaacctccacatcaatgctcatttcataggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatcca |
211 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
7344638 |
aacttctgccttgtttccgataacaacctccacataaacgctcacttcattggtagaagaaacaagaacatgaaaagagacttcacatgggtacaatcca |
7344539 |
T |
|
| Q |
212 |
ttgttattctctttgacaatcaccaactcttccttggagcccaaaaaacagcaacatgggatgactctgtggatcgtcttgccctctcctttgacggcga |
311 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||| ||||| || || ||||||||||| |||||||| || |
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| T |
7344538 |
ttgttattctctttgacaatcaccaacttttccttggtgccaaaaaaacatcaacatgggatgattctgtagaccgccttgccctctcttttgacggtga |
7344439 |
T |
|
| Q |
312 |
acccatcaccctccacgaatctgaaggtgcaaaatgggaatc |
353 |
Q |
| |
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||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
7344438 |
acccatcaccctccacgaatcagaaggaacgaaatgggaatc |
7344397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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