View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_14 (Length: 384)
Name: NF15378_low_14
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 55075408 - 55075043
Alignment:
| Q |
1 |
aaccacacaaaattactaatatcaattaaaattccaaacaacagaagactaatctagctggatagagtagaggttagcatcttcatgtgaagagaggata |
100 |
Q |
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| T |
55075408 |
aaccacacaaaattactaatatcaattaaaatttcaaacaacagaagactaatctagctggatagagtagaggttagcatcttcatgtgaagagaggata |
55075309 |
T |
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| Q |
101 |
tcatgatatcacagggccctttatcttacaatgtgttgtcttgatgagaggatttgtggggagagataacatggactttcatgtgccaagtgaaaggtta |
200 |
Q |
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| T |
55075308 |
tcatgatatcacagggccctttatcttacaatgtgttgtcttgatgagatgatttgtggggagagataacatggactttcatgtgccaagtgaaaggtta |
55075209 |
T |
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| Q |
201 |
agtcacaatcaactttaaagattatcccttgggttgaaaaacagaaaaatttggtggccttttccatctcttccaccaagcaatctcattcgcagaacat |
300 |
Q |
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| T |
55075208 |
agtcacaatcaactttaaagattatcccttgggttgaaaaacagaaaaatttgttggccttttccatctcttccaccaagcaatctcattcgcagaacat |
55075109 |
T |
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| Q |
301 |
gaagagtctatgcaaggaaggtgacatccacttaactagttccccatatagaaatagagaaatatt |
366 |
Q |
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| T |
55075108 |
gaagagtctatgcaaggaaggtgacatccacttaactagttccccatatagaaatagagaaatatt |
55075043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 50371418 - 50371493
Alignment:
| Q |
282 |
aatctcattcgcagaacatgaagagtctatgcaaggaaggtgacatccacttaactagttccccatatagaaatag |
357 |
Q |
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| T |
50371418 |
aatctcattcgtagatcatgaagagtctatgcaaggaaggtgacatccacttaactagttcctcacatagaaatag |
50371493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 50371212 - 50371291
Alignment:
| Q |
136 |
ttgtcttgatgagaggatttgtggggagaga-taacatggactttcatgtgccaagtgaaaggttaagtcacaatcaactt |
215 |
Q |
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| T |
50371212 |
ttgtcttgatgagaagaattgtggggagagagtaacatggt-tttcatgtgccaaatgaaaggtaaagtcaccatcaactt |
50371291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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