View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_15 (Length: 373)
Name: NF15378_low_15
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 354
Target Start/End: Complemental strand, 37109223 - 37108887
Alignment:
| Q |
18 |
aaaaagggtgtcttttccatcaaacnnnnnnngaggaggcttttttggagtgatgatatttttacaatcattttaagatatcttttgagacaaccttctc |
117 |
Q |
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| T |
37109223 |
aaaaagggtgtcttttccatcaaacaaaaaaagaggaggcttttttggagtgatgatatttttacaatcattttaagatatcttttgagacaaccttctc |
37109124 |
T |
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| Q |
118 |
ttttgggacaaaaacaatagaagagggggagagagagacgtgtgtagaaattagagtataagtaataagagagacttgccccaaaacttgtctcaaaatg |
217 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37109123 |
ttttgagacaaaaacaatagaagagggggagagagagacgtgtgtagaaattagagtataagtaataagagagacttgccccaaaacttgtctcaaaatg |
37109024 |
T |
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| Q |
218 |
ttaaaatttctttggtggataagcattttttaagccttataactttttctttggtatataatgtatctactatgaatcacaatattcagaatgcaatata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37109023 |
ttaaaatttctttggtggataagcattttttaagccttataactttttctttggtatataatgtatctaatatgaatcacaatattcagaatgcaatata |
37108924 |
T |
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| Q |
318 |
gatcgtcaaaataattgtcggtgtttgtctacgtgcc |
354 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
37108923 |
gatcgtcaaaataattgtcggtgtttgtctacgtgcc |
37108887 |
T |
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