View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_16 (Length: 356)
Name: NF15378_low_16
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 132 - 337
Target Start/End: Complemental strand, 34952349 - 34952144
Alignment:
| Q |
132 |
caaaagcaaactcaacatatttcattgataatcaccgattgaatttcagatggagtgtatcataaacttgatgactagcgtatcctaaagaaacttatca |
231 |
Q |
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| T |
34952349 |
caaaagcaaactcaacatatttcattgataatcaccgattgaatttcagatggagtgtatcataaacttgatgactagcgtatcctaaagaaacttatca |
34952250 |
T |
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| Q |
232 |
taatgtgaaattatagcattaaactcaagattgagagttaagtatactgaatatgtcattcacaattgatttacaatcaagttcaatatacacattagta |
331 |
Q |
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| T |
34952249 |
taatgtgaaattatagcatcaaactcaagattgagagttaagtatactgaatatgtcattcacaattgatttacaatcaagttcaatatacacattagta |
34952150 |
T |
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| Q |
332 |
atgttc |
337 |
Q |
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|||||| |
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| T |
34952149 |
atgttc |
34952144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 34952493 - 34952379
Alignment:
| Q |
3 |
ttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattgattcatcatcaatatcaattctacaccaacttcaat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34952493 |
ttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattgattcatgatcaatatcaattctacaccaacttcaat |
34952394 |
T |
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| Q |
103 |
ttcacacattctcta |
117 |
Q |
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| T |
34952393 |
ttcacacattctcta |
34952379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 34970350 - 34970272
Alignment:
| Q |
1 |
tattatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattgattcatcatcaat |
79 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||| |
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| T |
34970350 |
tattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattcatcatcaat |
34970272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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