View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15378_low_2 (Length: 720)

Name: NF15378_low_2
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15378_low_2
NF15378_low_2
[»] chr6 (22 HSPs)
chr6 (16-713)||(7132088-7132785)
chr6 (22-588)||(7135136-7135702)
chr6 (347-588)||(7138059-7138300)
chr6 (438-691)||(6423710-6423963)
chr6 (431-654)||(6427023-6427246)
chr6 (285-581)||(19633012-19633314)
chr6 (392-659)||(8913372-8913639)
chr6 (303-700)||(7993412-7993797)
chr6 (194-328)||(6593685-6593819)
chr6 (399-496)||(6417092-6417189)
chr6 (443-565)||(6596238-6596360)
chr6 (441-567)||(10579099-10579225)
chr6 (212-336)||(14821544-14821668)
chr6 (597-708)||(6403357-6403468)
chr6 (621-708)||(6594139-6594226)
chr6 (426-658)||(6410532-6410765)
chr6 (427-487)||(14809708-14809768)
chr6 (394-477)||(9412143-9412223)
chr6 (428-477)||(28935357-28935406)
chr6 (429-496)||(6593920-6593987)
chr6 (441-487)||(6395546-6395592)
chr6 (578-652)||(10579302-10579376)
[»] chr7 (3 HSPs)
chr7 (345-496)||(10615713-10615864)
chr7 (392-496)||(10169002-10169106)
chr7 (392-496)||(10176527-10176631)
[»] chr1 (5 HSPs)
chr1 (371-487)||(19467362-19467478)
chr1 (531-708)||(33160983-33161160)
chr1 (193-336)||(33161355-33161498)
chr1 (416-498)||(7555196-7555278)
chr1 (429-487)||(33161207-33161265)
[»] chr4 (16 HSPs)
chr4 (427-487)||(553768-553828)
chr4 (211-498)||(21833048-21833335)
chr4 (447-496)||(571330-571379)
chr4 (349-470)||(53760205-53760323)
chr4 (414-487)||(661867-661940)
chr4 (414-487)||(1755562-1755635)
chr4 (455-487)||(1547718-1547750)
chr4 (450-498)||(3437630-3437678)
chr4 (395-465)||(532773-532843)
chr4 (308-354)||(532878-532924)
chr4 (212-330)||(1552293-1552411)
chr4 (414-480)||(8186333-8186399)
chr4 (434-479)||(1545881-1545926)
chr4 (249-334)||(1546023-1546108)
chr4 (621-658)||(3438186-3438223)
chr4 (449-498)||(55907684-55907733)
[»] chr3 (3 HSPs)
chr3 (370-496)||(51763323-51763446)
chr3 (399-496)||(13469608-13469705)
chr3 (438-487)||(1657536-1657585)
[»] chr5 (2 HSPs)
chr5 (212-344)||(17205870-17206002)
chr5 (437-480)||(28532829-28532872)
[»] chr8 (8 HSPs)
chr8 (394-480)||(5766559-5766645)
chr8 (308-496)||(17642806-17642991)
chr8 (395-480)||(14004159-14004244)
chr8 (447-496)||(21236154-21236203)
chr8 (416-496)||(17635632-17635712)
chr8 (451-487)||(32151977-32152013)
chr8 (438-487)||(28246056-28246105)
chr8 (439-484)||(34935986-34936031)
[»] scaffold1155 (1 HSPs)
scaffold1155 (304-479)||(1753-1925)
[»] scaffold0345 (1 HSPs)
scaffold0345 (304-479)||(8291-8463)
[»] scaffold0105 (1 HSPs)
scaffold0105 (304-479)||(30516-30688)
[»] chr2 (1 HSPs)
chr2 (449-498)||(1036620-1036669)


Alignment Details
Target: chr6 (Bit Score: 650; Significance: 0; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 16 - 713
Target Start/End: Complemental strand, 7132785 - 7132088
Alignment:
Q  16 atatcgtttctaatatccaatgaaaaggaagagaacttgttccctaaaatcatattcaccgaacaatttactcaccaaaagtccggaggtttcagattca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7132785 atatcgtttctaatatccaatgaaaaggaagagaacttgttccctaaaatcatgttcaccgaacaatttactcaccaaaagtccggaggtttcagattca 7132686  T
Q  116 aaatgttcgtatttacctgatgagtgttgggaaattatcttcaggttcatccacaaagacgacttcaagcaacgctgcttgaattctctttcttttgtct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7132685 aaatgttcgtatttacctgatgagtgttgggaaattatcttcaggttcatccacaaagacggcttcaagcaacgctgcttgaattctctttcttttgtct 7132586  T
Q  216 ccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132585 ccaaagagttcctctccatcatcgaccgtcgtcgattctcactcatcgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaa 7132486  T
Q  316 cctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatc 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7132485 cctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatc 7132386  T
Q  416 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaaca 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  7132385 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaaca 7132286  T
Q  516 acgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattca 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7132285 acgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaactaacttcattaatggaattca 7132186  T
Q  616 ctgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgcctttgttacttc 713  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||    
T  7132185 ctgtatgttatccaagtggcgatgtatacaacatttgaatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgtcttggtttcttc 7132088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 22 - 588
Target Start/End: Complemental strand, 7135702 - 7135136
Alignment:
Q  22 tttctaatatccaatgaaaaggaagagaacttgttccctaaaatcatattcaccgaacaatttactcaccaaaagtccggaggtttcagattcaaaatgt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135702 tttctaatatccaatgaaaaggaagagaacttgttccctaaaatcatattcaccgaacaatttactcaccaaaagtccggaggtttcagattcaaaatgt 7135603  T
Q  122 tcgtatttacctgatgagtgttgggaaattatcttcaggttcatccacaaagacgacttcaagcaacgctgcttgaattctctttcttttgtctccaaag 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135602 tcgtatttacctgatgagtgttgggaaattatcttcaggttcatccacaaagacgacttcaagcaacgctgcttgaattctctttcttttgtctccaaag 7135503  T
Q  222 agttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaa 321  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7135502 agttcctctccatcatcgaccgtcgtcgattctcactcatcgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaa 7135403  T
Q  322 ctcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaac 421  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7135402 ctcccttgacctctcaaactacaacgatgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaac 7135303  T
Q  422 caacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatc 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  7135302 caacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtgtctctacaacaacgatc 7135203  T
Q  522 tgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaa 588  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||| ||||    
T  7135202 tgttacttattgccgattgttttccaatgcacaaagaactcaaccttggtcaccttttggtgcacaa 7135136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 347 - 588
Target Start/End: Complemental strand, 7138300 - 7138059
Alignment:
Q  347 ggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggt 446  Q
    |||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7138300 ggtgacctcgacatacttctccgcaaaatctctcatttcccactaaagaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggt 7138201  T
Q  447 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttcc 546  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7138200 tgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaacgatctgttacttattgccgattgttttcc 7138101  T
Q  547 aatgcttaaagaactcaaccttggtcaccctttggtgaacaa 588  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  7138100 aatgcttaaagaactcaaccttggtcaccttttggtgcacaa 7138059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 438 - 691
Target Start/End: Complemental strand, 6423963 - 6423710
Alignment:
Q  438 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccga 537  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||||  |  | |||||||| ||||| ||| ||||||||| | ||| |    
T  6423963 caaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgtggccaa 6423864  T
Q  538 ttgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcga 637  Q
    |||||| ||| |||| ||||||||||||||    | ||||||||| | | || |||| || |||||||||||||||| |  | ||||||||||||| | |    
T  6423863 ttgtttcccattgctcaaagaactcaacctcaaacgccctttggtcatcgatgaaactaatttcattaatggaattcgcaatttgttatccaagtgtcaa 6423764  T
Q  638 tgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtt 691  Q
    ||||||||||||||| |||||   ||||  ||||||||||| ||| ||||||||    
T  6423763 tgtatacaacatttgaatcttgactgcatttattttctgaaggatcaacatgtt 6423710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 431 - 654
Target Start/End: Complemental strand, 6427246 - 6427023
Alignment:
Q  431 tttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttactta 530  Q
    ||||||| ||| ||||||| || |||||||||||| |||||||||||||| | ||||  ||||| |  ||| ||| |||  ||||||||||||| ||  |    
T  6427246 tttcctgtaaacgggttgcaagttttctcccaaaatattacaactttgacctttctcacttgttacggtacttttttctgtaacaacgatctgtcaccca 6427147  T
Q  531 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 630  Q
    |||  |||||||| ||  |||| ||| ||||||||||   |||||||||||| | |||| |  | ||||||||||||  |||||||||||||||||||||    
T  6427146 ttgttgattgtttccctttgctcaaacaactcaacctccatcaccctttggtcatcaataagcctaacttcattaattcaattcactgtatgttatccaa 6427047  T
Q  631 gtggcgatgtatacaacatttgga 654  Q
    ||| | ||||||||||||||||||    
T  6427046 gtgtccatgtatacaacatttgga 6427023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 285 - 581
Target Start/End: Complemental strand, 19633314 - 19633012
Alignment:
Q  285 tcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctccttt 384  Q
    |||||||||||||  ||| |||||| |||||||||| |||||| ||||||||| | | ||||  |||  |  ||   ||||| |  |||||||||| ||     
T  19633314 tcctcggtcgcctattcagaaggtttaccaacctcatctccctcgacctctcacaattcaaccatgatgtcaaccaccttctgcgtaaaatctctcgtta 19633215  T
Q  385 cccactaaagaaactcacatcccttagtatctc---caaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgaca 481  Q
    |||| | |||||||||||||| ||| |||||||   |||||||  | |||||||  ||||||||||||||||||||||| ||| |||||||||||||||     
T  19633214 cccattgaagaaactcacatctctttgtatctctagcaaccaattcccctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgacc 19633115  T
Q  482 tctctcgattgttccaatacgtttctctacaacaacgatctgttact---tattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctt 578  Q
    ||||||  |||  |  | | |||||||||||||||||| ||||||||    |||||||||||||| ||| || | |||||||||||||| | | ||||||    
T  19633114 tctctcacttgcactcacatgtttctctacaacaacgaactgttactcaacattgccgattgtttcccattgttgaaagaactcaacctcgcttaccctt 19633015  T
Q  579 tgg 581  Q
    |||    
T  19633014 tgg 19633012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 392 - 659
Target Start/End: Original strand, 8913372 - 8913639
Alignment:
Q  392 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 491  Q
    |||||||||||||| || | |||||||||||||   ||||||||||| |||||||||| || ||| ||  |||| |||||||||||||| |||||| |||    
T  8913372 aagaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaatt 8913471  T
Q  492 gttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatca 591  Q
    ||||||| | ||||||  | |||||| | |||||| |  |||  | |||||| ||  |||||||||||||||||||| ||||| | ||||| ||| ||||    
T  8913472 gttccaacatgtttcttgataacaacaaactgttattcgttgttggttgtttccctttgcttaaagaactcaaccttagtcacaccttggtcaactatca 8913571  T
Q  592 aacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatctta 659  Q
     |  ||  || |||||  |||||||  | ||||||||||||| | |||| |||||||||||| |||||    
T  8913572 cagtaatgtctttaattaaattcaccatttgttatccaagtgtcaatgtttacaacatttggttctta 8913639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 303 - 700
Target Start/End: Original strand, 7993412 - 7993797
Alignment:
Q  303 aaaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcac 402  Q
    |||| ||||| ||||| ||||||||  ||||||| |||||| |  |||||||||||| | |||| |   |||||||| ||||||||  |  |||  ||||    
T  7993412 aaagattcactaaccttaactccctcaacctctcgaactaccattgtgaccttgacaagtttctgcgggaaatctctactttcccatcattgaacatcac 7993511  T
Q  403 atcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacg 502  Q
    |||||||| ||||||| |||||  || |||||| ||  |||| |||||||| ||  ||||||||||||||| |||||| |||||| |||||||||||||     
T  7993512 atcccttaatatctccgaccaatgcaactttcccgcctatggtttgcgagcatttgcccaaaacattacaattttgacctctctcaattgttccaatact 7993611  T
Q  503 tttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttca 602  Q
    |||||    ||   ||  |||||||| |||||| ||||||| ||  |||| |||||||||||||| ||||            ||||| | || | || ||    
T  7993612 tttcttggtaagggcggcctgttactcattgccaattgtttccctttgctcaaagaactcaacctcggtc------------acaatgacactagctaca 7993699  T
Q  603 ttaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttg 700  Q
    |||||| | |||||| | |||| |||||||| ||||||||||||||||| |||||||   | |  |||||||||||||||  ||||||| ||||||||    
T  7993700 ttaatgaatttcactatttgttgtccaagtgtcgatgtatacaacatttagatcttaatggtatttattttctgaatgatctacatgttgctgagttg 7993797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 194 - 328
Target Start/End: Original strand, 6593685 - 6593819
Alignment:
Q  194 ttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtc 293  Q
    ||||||||||| ||  | || |||||| ||||  |||| ||||| |||||||  ||||||||| || |||||||| ||| ||||  ||||||||||||||    
T  6593685 ttgaattctctatccctcgtatccaaacagtttttctctatcattgaccgtctccgattctcaatctttgtcaaaaatggaacactccctttcctcggtc 6593784  T
Q  294 gcctcctcaaaaggttcaccaacctcaactccctt 328  Q
    |||||||| ||||||||||||||||||| ||||||    
T  6593785 gcctcctcgaaaggttcaccaacctcaaatccctt 6593819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 399 - 496
Target Start/End: Complemental strand, 6417189 - 6417092
Alignment:
Q  399 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 496  Q
    ||||||| |||| |||||||||||||| ||| ||||| | ||||||||| ||||||||||||||||| | |||||||||||| ||||||  |||||||    
T  6417189 tcacatcacttaatatctccaaccaacccacttttcccgtaaatgggttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 443 - 565
Target Start/End: Original strand, 6596238 - 6596360
Alignment:
Q  443 gggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgtt 542  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||  |||||| |  |  ||||||||||| || ||  ||||||| ||||| |||||||    
T  6596238 gggttgcgagttttctcccaaaacataacaactttgacctctctcacttgttctataaactttctctacaaaaatgacttgttactcattgctgattgtt 6596337  T
Q  543 ttccaatgcttaaagaactcaac 565  Q
    | ||| |||| ||||||||||||    
T  6596338 tcccattgctcaaagaactcaac 6596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 441 - 567
Target Start/End: Original strand, 10579099 - 10579225
Alignment:
Q  441 atgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattg 540  Q
    ||||||| |||||||||||||||||||| ||||||||||||  | ||  |||||| | |   ||||||||||| || ||  |||||||  ||||||||||    
T  10579099 atgggttacgagctttctcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattg 10579198  T
Q  541 ttttccaatgcttaaagaactcaacct 567  Q
    ||| ||| |||| ||||||||||||||    
T  10579199 tttcccattgctcaaagaactcaacct 10579225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 212 - 336
Target Start/End: Complemental strand, 14821668 - 14821544
Alignment:
Q  212 gtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttca 311  Q
    ||||||||  |||||||||| |||| | | |||| |||||| ||||| | | ||||||| |||||| |||||||||||  |   ||| ||||||||||||    
T  14821668 gtctccaagcagttcctctctatcaccaatcgtcttcgattttcacttaatatcaaagaggcaacacgccctttcctcttttctctcttcaaaaggttca 14821569  T
Q  312 ccaacctcaactcccttgacctctc 336  Q
    ||||||||| |||||||||| ||||    
T  14821568 ccaacctcacctcccttgacttctc 14821544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 597 - 708
Target Start/End: Complemental strand, 6403468 - 6403357
Alignment:
Q  597 acttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctga 696  Q
    |||| |||||||||||  ||| | |||||||||||||  ||||||||||||||||||||||||    ||  |||||||||||||||  ||||||| ||||    
T  6403468 actttattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctga 6403369  T
Q  697 gttgcctttgtt 708  Q
    |||  |||||||    
T  6403368 gttttctttgtt 6403357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 621 - 708
Target Start/End: Original strand, 6594139 - 6594226
Alignment:
Q  621 tgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgcctttgtt 708  Q
    ||||||||||||| |||||||||||||||||| |||||| || | |   ||||||||||||| |||||||| | |||||| |||||||    
T  6594139 tgttatccaagtgtcgatgtatacaacatttgaatcttaagtacgctcgttttctgaatgatcaacatgttgccgagttgtctttgtt 6594226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 658
Target Start/End: Complemental strand, 6410765 - 6410532
Alignment:
Q  426 acacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgtt 525  Q
    ||||||||||   ||||||||||| || ||||||||||||||||||||||||||| ||| ||  |||  || |   |||  |  | |||||| | ||| |    
T  6410765 acacctttcccataaatgggttgcaagttttctcccaaaacattacaactttgacctctttcacttgcccctacgtgttatttgataacaacaacctgat 6410666  T
Q  526 acttattgccgattgttttccaatgcttaaagaactcaa-ccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgtt 624  Q
    |||  |||| |||||||| ||| |||| ||||||||||| |||   |||||||| | | ||  ||| | | || ||||||||||||||||||| | ||||    
T  6410665 actctttgctgattgtttcccattgctcaaagaactcaaacctcattcacccttcgttcaagtatcgatctaatttcattaatggaattcactatctgtt 6410566  T
Q  625 atccaagtggcgatgtatacaacatttggatctt 658  Q
    ||||||||| | |||| |||||||| ||||||||    
T  6410565 atccaagtgccaatgtttacaacatatggatctt 6410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 487
Target Start/End: Complemental strand, 14809768 - 14809708
Alignment:
Q  427 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 487  Q
    ||||||||| ||||| ||||||| || ||||||||||||||||||||||||| | ||||||    
T  14809768 cacctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttggcctctctc 14809708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 477
Target Start/End: Complemental strand, 9412223 - 9412143
Alignment:
Q  394 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 477  Q
    ||||||| |||| |||| | |||||||||| | |||| |||| ||   |||||||||||||||||||||||| |||||||||||    
T  9412223 gaaactctcatcacttaatctctccaaccatcgcaccattcccgc---tgggttgcgagctttctcccaaaatattacaacttt 9412143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 28935406 - 28935357
Alignment:
Q  428 acctttcctgcaaatgggttgcgagctttctcccaaaacattacaacttt 477  Q
    ||||||||  |||| ||||||||||| |||||||||||||||||||||||    
T  28935406 acctttcccacaaaagggttgcgagccttctcccaaaacattacaacttt 28935357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 429 - 496
Target Start/End: Original strand, 6593920 - 6593987
Alignment:
Q  429 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 496  Q
    |||||||  ||||||| ||||||| |||||| ||||| |||||||||||||| ||| || ||||||||    
T  6593920 cctttccctcaaatggtttgcgagttttctcacaaaagattacaactttgacctctttcaattgttcc 6593987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 6395592 - 6395546
Alignment:
Q  441 atgggttgcgagctttctcccaaaacattacaactttgacatctctc 487  Q
    ||||||||| |||| |||||||||| |||||||||||||| ||||||    
T  6395592 atgggttgcaagctctctcccaaaatattacaactttgacctctctc 6395546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 578 - 652
Target Start/End: Original strand, 10579302 - 10579376
Alignment:
Q  578 ttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttg 652  Q
    ||||| ||||||| |||  | ||||||||||||||||||| | ||||||| ||||| | |||||| |||||||||    
T  10579302 ttggtcaacaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttg 10579376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 496
Target Start/End: Complemental strand, 10615864 - 10615713
Alignment:
Q  345 acggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgg 444  Q
    ||||||||||||||   ||||||| ||||||||||| |||||||  |  |||  ||||||| |||| ||| |||||||||| |||  |||| ||||||||    
T  10615864 acggtgaccttgacgctcttctccgcaaaatctctcgtttcccatcattgaacatcacatcacttaatatttccaaccaacccacagttcccgcaaatgg 10615765  T
Q  445 gttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 496  Q
    ||| ||||||||||||||||| |||||||||||||| ||||||  |||||||    
T  10615764 gttacgagctttctcccaaaagattacaactttgacctctctcacttgttcc 10615713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 496
Target Start/End: Original strand, 10169002 - 10169106
Alignment:
Q  392 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 491  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10169002 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10169101  T
Q  492 gttcc 496  Q
    |||||    
T  10169102 gttcc 10169106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 496
Target Start/End: Original strand, 10176527 - 10176631
Alignment:
Q  392 aagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgatt 491  Q
    |||||||||||||| ||   ||| ||| |||||  |||| |||| |||||||||||||||| |||||| ||||| |||| ||||||||| ||||||  ||    
T  10176527 aagaaactcacatcactcgatatttcctaccaatgcaccattcccgcaaatgggttgcgagttttctctcaaaatattagaactttgacctctctcactt 10176626  T
Q  492 gttcc 496  Q
    |||||    
T  10176627 gttcc 10176631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 371 - 487
Target Start/End: Original strand, 19467362 - 19467478
Alignment:
Q  371 aaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatta 470  Q
    |||||||||| ||||||| | || ||||||||||| || | ||||||||||  ||||||| |||| |||||||||||||||| |||| | ||||| ||||    
T  19467362 aaaatctctcatttcccattgaaaaaactcacatctctcattatctccaacagacacaccattcccgcaaatgggttgcgagttttcactcaaaatatta 19467461  T
Q  471 caactttgacatctctc 487  Q
    |||||||||| ||||||    
T  19467462 caactttgacctctctc 19467478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 531 - 708
Target Start/End: Complemental strand, 33161160 - 33160983
Alignment:
Q  531 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 630  Q
    ||||||||||||| ||  |||| ||| |||||||||| |||||||||  | | |||||||| || ||||||||||||||| |||||| | | ||||||||    
T  33161160 ttgccgattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatccaa 33161061  T
Q  631 gtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgcctttgtt 708  Q
     || | || ||||||| |||||||||| |    ||| ||||||||||||||| |||||||| | |||||  |||||||    
T  33161060 ctgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgttgccgagttctctttgtt 33160983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 336
Target Start/End: Complemental strand, 33161498 - 33161355
Alignment:
Q  193 cttgaattctctttcttttgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggt 292  Q
    |||||||||||| ||  | ||||||||| |||| ||||||||||   |  ||| ||||||||||||||   ||||| |  |||||  ||||||||||  |    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactcaccctcaaaaactcaacacaccctttcctccct 33161399  T
Q  293 cgcctcctcaaaaggttcaccaacctcaactcccttgacctctc 336  Q
    || ||| | ||||||||||||||||||| |||||||||||||||    
T  33161398 cgtctcttgaaaaggttcaccaacctcacctcccttgacctctc 33161355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 7555278 - 7555196
Alignment:
Q  416 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 498  Q
    |||||||||| |||| | ||||||| ||| |||||||||||||||||||| ||||||||||| || || |||  |||||||||    
T  7555278 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 487
Target Start/End: Complemental strand, 33161265 - 33161207
Alignment:
Q  429 cctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 487  Q
    ||||||| || ||||| |||||| |||||||||||| ||||| ||||||||| ||||||    
T  33161265 cctttcccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctc 33161207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 427 - 487
Target Start/End: Complemental strand, 553828 - 553768
Alignment:
Q  427 cacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 487  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  553828 caccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctctctc 553768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 211 - 498
Target Start/End: Original strand, 21833048 - 21833335
Alignment:
Q  211 tgtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttc 310  Q
    |||||||||| | ||||||||||||||||| | || |||||| ||||| | ||||    || ||||| ||||| || || ||| |||| ||||||| |||    
T  21833048 tgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaacacgccctctcatccgtcccctcttcaaaagattc 21833147  T
Q  311 accaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatccctta 410  Q
    |||||||| | ||||||| |||||||   || | ||||||||||  |||  |||||||   ||||||||| |||||||  |  |||  |||  || || |    
T  21833148 accaaccttacctcccttaacctctctcgcttccacggtgacctcaacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactca 21833247  T
Q  411 gtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 498  Q
     |||||||||| ||| |||| |||| ||| |||||||||||| |||  | ||||||||||| |||||||| ||||||  |||||||||    
T  21833248 atatctccaacaaacccaccattcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgttccaa 21833335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 447 - 496
Target Start/End: Complemental strand, 571379 - 571330
Alignment:
Q  447 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 496  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  571379 tgcgagcattctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 349 - 470
Target Start/End: Original strand, 53760205 - 53760323
Alignment:
Q  349 tgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttg 448  Q
    ||||||||||| | |||| | || |||||||| ||||||| |   |||||||||||| || | | |||||||||||  |||  | | |||||||||||||    
T  53760205 tgaccttgacaaggttcttcgcagaatctctcgtttcccatt---gaaactcacatcactcaatctctccaaccaatccactatccatgcaaatgggttg 53760301  T
Q  449 cgagctttctcccaaaacatta 470  Q
    |||||||||| |||||||||||    
T  53760302 cgagctttcttccaaaacatta 53760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 487
Target Start/End: Complemental strand, 661940 - 661867
Alignment:
Q  414 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 487  Q
    |||||||||||  |||| |||| || ||||| |||||||||||||||||| | ||||||||||| || ||||||    
T  661940 tctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctc 661867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 487
Target Start/End: Complemental strand, 1755635 - 1755562
Alignment:
Q  414 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 487  Q
    |||||||||||||| || ||||  | || ||||||| ||||||||| ||||| |||||||||||||| ||||||    
T  1755635 tctccaaccaacacgccattcccaccaaagggttgcaagctttctctcaaaagattacaactttgacctctctc 1755562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 455 - 487
Target Start/End: Original strand, 1547718 - 1547750
Alignment:
Q  455 ttctcccaaaacattacaactttgacatctctc 487  Q
    |||||||||||||||||||||||||||||||||    
T  1547718 ttctcccaaaacattacaactttgacatctctc 1547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 498
Target Start/End: Original strand, 3437630 - 3437678
Alignment:
Q  450 gagctttctcccaaaacattacaactttgacatctctcgattgttccaa 498  Q
    |||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaa 3437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 395 - 465
Target Start/End: Complemental strand, 532843 - 532773
Alignment:
Q  395 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaa 465  Q
    ||||||||||| || | | |||| |||||||||||| |||| ||||||||||| ||||| |||||| ||||    
T  532843 aaactcacatcactcaatctctctaaccaacacaccattcccgcaaatgggttacgagccttctccaaaaa 532773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 532924 - 532878
Alignment:
Q  308 ttcaccaacctcaactcccttgacctctcaaactacaacggtgacct 354  Q
    ||||||||||||| ||||||||||||  ||| |||||||||||||||    
T  532924 ttcaccaacctcacctcccttgaccttacaagctacaacggtgacct 532878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 1552293 - 1552411
Alignment:
Q  212 gtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttca 311  Q
    ||||||||| |||||| ||| |||| ||||||||  |||||||| |||| |||     |  ||||| ||||||||||| | | |||  |||||||||||     
T  1552293 gtctccaaacagttcccctctatcaccgaccgtctccgattctctctcagtgtttggaagccaacacgccctttcctccgccaccttttcaaaaggttct 1552392  T
Q  312 ccaacctcaactcccttga 330  Q
    |||||||||||||||||||    
T  1552393 ccaacctcaactcccttga 1552411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 414 - 480
Target Start/End: Original strand, 8186333 - 8186399
Alignment:
Q  414 tctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 480  Q
    |||| ||| ||| |||| ||||||||||||| ||||||| | |||||| ||| ||||||||||||||    
T  8186333 tctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgac 8186399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 1545926 - 1545881
Alignment:
Q  434 cctgcaaatgggttgcgagctttctcccaaaacattacaactttga 479  Q
    ||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  1545926 cctgccaatgggttgcgatctttctctcaaaatattacaactttga 1545881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 334
Target Start/End: Complemental strand, 1546108 - 1546023
Alignment:
Q  249 gattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttcaccaacctcaactcccttgacctc 334  Q
    |||| ||||||||| ||| | || ||||| ||||||| ||   | ||||||||||||||||||||| ||||| ||||||| |||||    
T  1546108 gattgtcactcattatcagaaattcaacacgcccttttcttcattgcctcctcaaaaggttcaccagcctcacctcccttaacctc 1546023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 658
Target Start/End: Original strand, 3438186 - 3438223
Alignment:
Q  621 tgttatccaagtggcgatgtatacaacatttggatctt 658  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 449 - 498
Target Start/End: Original strand, 55907684 - 55907733
Alignment:
Q  449 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 498  Q
    ||||||||||||||||| |||||||||||||  ||||||  |||||||||    
T  55907684 cgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 370 - 496
Target Start/End: Original strand, 51763323 - 51763446
Alignment:
Q  370 caaaatctctcctttcccactaaagaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacatt 469  Q
    ||||||||||| ||||||| |   |||||||||||| |||| | ||||||| || |  ||||||||| ||||||||||||||| ||| || ||||| |||    
T  51763323 caaaatctctcgtttcccatt---gaaactcacatcacttaatctctccaaacagcttacctttcctacaaatgggttgcgagttttttcacaaaagatt 51763419  T
Q  470 acaactttgacatctctcgattgttcc 496  Q
    ||||||||||||||||||  |||||||    
T  51763420 acaactttgacatctctcacttgttcc 51763446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 399 - 496
Target Start/End: Original strand, 13469608 - 13469705
Alignment:
Q  399 tcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 496  Q
    ||||||| |||| | |||||||||||| |||  |||||||||||||||| ||||||||||||||||| | ||||||  |||| ||||||  |||||||    
T  13469608 tcacatcacttaatctctccaaccaacccactgttcctgcaaatgggttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcc 13469705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 487
Target Start/End: Complemental strand, 1657585 - 1657536
Alignment:
Q  438 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 487  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  1657585 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 1657536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 212 - 344
Target Start/End: Complemental strand, 17206002 - 17205870
Alignment:
Q  212 gtctccaaagagttcctctccatcatcgaccgtcgtcgattctcactcattgtcaaagatgcaacaggccctttcctcggtcgcctcctcaaaaggttca 311  Q
    ||||||||| |||| ||||| |||| |||| ||   ||||||||||||| |||| | |||  ||||  ||||||| | |||| |||| ||||||||||||    
T  17206002 gtctccaaacagttactctctatcaccgacagtttccgattctcactcactgtctatgatcaaacacaccctttctttggtcacctcttcaaaaggttca 17205903  T
Q  312 ccaacctcaactcccttgacctctcaaactaca 344  Q
    |||||||||  ||||||||| ||||| ||||||    
T  17205902 ccaacctcacatcccttgacttctcacactaca 17205870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 480
Target Start/End: Complemental strand, 28532872 - 28532829
Alignment:
Q  437 gcaaatgggttgcgagctttctcccaaaacattacaactttgac 480  Q
    |||||||| ||||||||||| || ||||||||||||||||||||    
T  28532872 gcaaatggattgcgagctttttcacaaaacattacaactttgac 28532829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 480
Target Start/End: Original strand, 5766559 - 5766645
Alignment:
Q  394 gaaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 480  Q
    |||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  5766559 gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 5766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 496
Target Start/End: Original strand, 17642806 - 17642991
Alignment:
Q  308 ttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatccc 407  Q
    ||||||| ||||  |||||| ||||| ||| ||||||| ||||||||  ||| |||| || |||| ||||||  ||| ||| |   |||||||||||| |    
T  17642806 ttcaccagcctcgcctccctcgacctttcacactacaaaggtgacctaaacaagcttatcaacaagatctcttgttttccatt---gaaactcacatcac 17642902  T
Q  408 ttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 496  Q
    | | | |||||||||| | |||| ||||  | |||||||| | |||||||||||| || |||||||||||||| ||||||  |||||||    
T  17642903 tcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgttcc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 480
Target Start/End: Complemental strand, 14004244 - 14004159
Alignment:
Q  395 aaactcacatcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgac 480  Q
    ||||||||||| || | | | |||||||||| || | ||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  14004244 aaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgac 14004159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 447 - 496
Target Start/End: Complemental strand, 21236203 - 21236154
Alignment:
Q  447 tgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 496  Q
    ||||||| ||||||||||| | ||||||||||||||||||| ||||||||    
T  21236203 tgcgagcattctcccaaaatactacaactttgacatctctcaattgttcc 21236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 17635632 - 17635712
Alignment:
Q  416 tccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttgacatctctcgattgttcc 496  Q
    |||||||||| |||| ||||  | |||||||| |||||||||||||  || |||||||||||||| ||||||  |||||||    
T  17635632 tccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 451 - 487
Target Start/End: Complemental strand, 32152013 - 32151977
Alignment:
Q  451 agctttctcccaaaacattacaactttgacatctctc 487  Q
    |||||||||||||||||||||||||||||| ||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctc 32151977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 487
Target Start/End: Original strand, 28246056 - 28246105
Alignment:
Q  438 caaatgggttgcgagctttctcccaaaacattacaactttgacatctctc 487  Q
    |||||||||||| ||||||||| |||||||||| |||||| || ||||||    
T  28246056 caaatgggttgcaagctttctctcaaaacattaaaactttaacctctctc 28246105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 439 - 484
Target Start/End: Original strand, 34935986 - 34936031
Alignment:
Q  439 aaatgggttgcgagctttctcccaaaacattacaactttgacatct 484  Q
    |||||| ||||||| |||||| ||||| ||||||||||||||||||    
T  34935986 aaatggtttgcgagttttctcacaaaatattacaactttgacatct 34936031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 479
Target Start/End: Original strand, 1753 - 1925
Alignment:
Q  304 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 403  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  1753 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 1849  T
Q  404 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 479  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  1850 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 1925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 479
Target Start/End: Complemental strand, 8463 - 8291
Alignment:
Q  304 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 403  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  8463 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 8367  T
Q  404 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 479  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  8366 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 304 - 479
Target Start/End: Original strand, 30516 - 30688
Alignment:
Q  304 aaggttcaccaacctcaactcccttgacctctcaaactacaacggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcaca 403  Q
    ||||||||| ||||| | ||||||| |||||||    |||||| |||||||  || |||| |||||  ||||||||| ||||||| |   ||| ||||||    
T  30516 aaggttcacaaaccttacctcccttaacctctcgtgttacaacagtgacctcaacgtgctactccatgaaatctctcgtttcccatt---gaacctcaca 30612  T
Q  404 tcccttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttga 479  Q
    || || | | ||||| |||||| ||   |||| ||| |||||||||||| ||| |||||||| |||||||||||||    
T  30613 tcactcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttga 30688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 449 - 498
Target Start/End: Original strand, 1036620 - 1036669
Alignment:
Q  449 cgagctttctcccaaaacattacaactttgacatctctcgattgttccaa 498  Q
    ||||||||||||||||| |||||||||||||| ||||||  |||||||||    
T  1036620 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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