View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_20 (Length: 294)
Name: NF15378_low_20
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 31063832 - 31063546
Alignment:
| Q |
1 |
caccaggttctgttgtctctgttacagcaattggcaccttgatatttgttcccttatatgacaaagttcttgtaccaattatgagaaaaatcactggtaa |
100 |
Q |
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| T |
31063832 |
caccaggttctgttgtctctgttacagcaattggcaccttgatatttgttcccttatatgacaaagttcttgtaccaattatgagaaaaatcactggtaa |
31063733 |
T |
|
| Q |
101 |
tgaaagaggcatcagcatccttagaagaattgccattggcttagcattttcagtcatggttatgattgttgcagccttagtagaagctaagagacttaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063732 |
tgaaagaggcatcagcatccttagaagaattgccattggcttagcattttcagtcatggttatgattgttgcagccttagtagaagctaagagacttaga |
31063633 |
T |
|
| Q |
201 |
atgcatgagcgagaaattctcagatcaggggaaacaggaaaaaatactatgagtgtcttttggttagtccctcaatatttgatcctt |
287 |
Q |
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| T |
31063632 |
atgcatgagcaagaaattctcagatcaggagaaacaggaaaaaatactatgagtgtcttttggttagtccctcaatatttgatcctt |
31063546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 31075188 - 31074997
Alignment:
| Q |
25 |
cagcaattggcaccttgatatttgttcccttatatgacaaagttcttgtaccaattatgagaaaaatcactggtaatgaaagaggcatcagcatccttag |
124 |
Q |
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|||||||||||||||| |||| |||||| |||||||||| || |||| ||||| |||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
31075188 |
cagcaattggcaccttaatatctgttccaatatatgacaagattattgttccaatgctgagaaaaatcactggtaatgaaagaggaatcagcatacttag |
31075089 |
T |
|
| Q |
125 |
aagaattgccattggcttagcattttcagtcatggttatgattgttgcagccttagtagaagctaagagacttagaatgcatgagcgagaaa |
216 |
Q |
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| T |
31075088 |
aagaatttccattggcttcacatcttcagtcatagttatgattgttgcagcattagtagaagctaagagacttagaatgcatgagcaagaaa |
31074997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 31057681 - 31057513
Alignment:
| Q |
70 |
ttgtaccaattatgagaaaaatcactggtaatgaaagaggcatcagcatccttagaagaattgccattggcttagcattttcagtcatggttatgattgt |
169 |
Q |
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|||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| || || ||| ||||| || | |||| ||| ||||| || | |
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| T |
31057681 |
ttgttccaattatgaggaaaatcactggcaatgaaagaggcatcagtatccttagcaggataaacatcggcttgacactctcagccattattatggttct |
31057582 |
T |
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| Q |
170 |
tgcagccttagtagaagctaagagacttagaatgcatgagcgagaaattctcagatcaggggaaacagg |
238 |
Q |
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| T |
31057581 |
ttcagccttagtagaagttaagagacttagaatgcttgagaatgaaatcttgagaacaggggaaacagg |
31057513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 31074997 - 31074960
Alignment:
| Q |
246 |
actatgagtgtcttttggttagtccctcaatatttgat |
283 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||| |
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| T |
31074997 |
actatgagtgtgttttggttagtgcctcaatatttgat |
31074960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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