View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_21 (Length: 290)
Name: NF15378_low_21
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 52988459 - 52988699
Alignment:
| Q |
1 |
catttagattcaaatcatgaaaatctgaacaacacttgttttcaatattatgcttctggactccatctcgactcttgtcgcagcttccttgatgacaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52988459 |
catttagattcaaatcatgaaaatctgaacaaaacttgttttcaatattatgcttctggactccatctcgactcttgtcgcagcttccttgatgacagtg |
52988558 |
T |
|
| Q |
101 |
atcatgattctccatgtttttgagagggttaacatttccaattaaacttggatttgaagtgcaggatggattctttgaggagcatgactgggaggcacac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52988559 |
atcatgattctccatgtttttgagagggttaacatttccaattaaacttggatttgaagtgcaggatggattctttgaggagcatgactgggaggcacac |
52988658 |
T |
|
| Q |
201 |
ttctggggctgagctttttctgagcaacaatgcttatggct |
241 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |
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| T |
52988659 |
ttctggggctgagctttttctgagcaacaacgcttatggct |
52988699 |
T |
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