View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_24 (Length: 271)
Name: NF15378_low_24
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_24 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 16700563 - 16700293
Alignment:
| Q |
1 |
tggttatgtaaaacttgtggattattgaacaaagttacttaagaatttttgtttgcactaaaccatgtcaagattgaagttcaagctacagaagtttccc |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16700563 |
tggttatgtaaaacttttggattattgaacaaagttacttaagaatttttgtttgcactaaaccatgtcaagattgaagttcaagctacagaagtttccc |
16700464 |
T |
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| Q |
101 |
aacaagactctgtaacagttactcaagaaaacatggcaaccgtttcacatctaaccaaaaagccattgaagcaaaatgataaagcactaaaaccgtgctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16700463 |
aacaagactctgtaacagttactcaagaaaacatggcaaccgtttcacatcttaccaaaaagccattgaagcaaaatgataaagcactaaaaccgtgctg |
16700364 |
T |
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| Q |
201 |
gaaccctcctgctccactcagtgagttttcaccattcatgattactcttgcctatgttgcttattgatcat |
271 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16700363 |
gaaccctcctgctccactcagtaagttttcaccattcatgattactcttgcatatgttgcttattgatcat |
16700293 |
T |
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