View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_28 (Length: 238)
Name: NF15378_low_28
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_28 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 18255620 - 18255400
Alignment:
| Q |
18 |
aatgtatgacgtattggccactaaaaccgtcagatctaaagagagaaatttctgatctgacgattctataagccgctgcatcatttagtgactttaacga |
117 |
Q |
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| T |
18255620 |
aatgtatgacgcattggctactaaaaccgtcagatctaaagagagaaatttctgatctgacgattctataagccgctgcatcatttagtgactttaacga |
18255521 |
T |
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| Q |
118 |
agattgacaacactcctaggaagtaagctcaagtttcacctcatcttcagagatgagacggtaacttgatcagtgttgtgtaactttttatttcttttgt |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18255520 |
agattgacgacactcctaggaagtaagctcaagtttcacctcatcttcagagatgagacggtaacttgatcagtgttgtgtaactttttatttcttttgt |
18255421 |
T |
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| Q |
218 |
caaaccggcacggattaaatc |
238 |
Q |
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| T |
18255420 |
caaaccggcacggattaaatc |
18255400 |
T |
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