View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_3 (Length: 585)
Name: NF15378_low_3
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 263 - 578
Target Start/End: Original strand, 11977885 - 11978201
Alignment:
| Q |
263 |
ttaacaagcaaagcaacacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagttctatgatagaattggccagatgg |
362 |
Q |
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| T |
11977885 |
ttaacaagcaaagcaacacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagtcctatgatagaattggccagatgg |
11977984 |
T |
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| Q |
363 |
acttccattgggaagcaatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataacca |
462 |
Q |
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| T |
11977985 |
acttccattgggaagcaatgctagcttcacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataacca |
11978084 |
T |
|
| Q |
463 |
gggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtat-agcattcatagcagctttagacaagacataagcaccaccagttt |
561 |
Q |
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| T |
11978085 |
gggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttt |
11978184 |
T |
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| Q |
562 |
taggccatcctttgctt |
578 |
Q |
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| T |
11978185 |
taggccatcctttgctt |
11978201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 278 - 578
Target Start/End: Original strand, 11982537 - 11982835
Alignment:
| Q |
278 |
acacattttgttattaaaccacataacatagtactaatcaaaaggaagacatgacttcagttctatgatagaattggccagatggacttccattgggaag |
377 |
Q |
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| T |
11982537 |
acacattttgttcttaaaccacataacatagtactaatcaaaaggcaga---gacttcagtccggttatagaatcggccagatggacttccattgggaag |
11982633 |
T |
|
| Q |
378 |
caatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattg |
477 |
Q |
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| T |
11982634 |
caatgctagcttgacaacactagcagcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattg |
11982733 |
T |
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| Q |
478 |
atgcataaagtaggaaaattcttagcaagaattcttgtat-agcattcatagcagctttagacaagacataagcaccaccagttttaggccatcctttgc |
576 |
Q |
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| T |
11982734 |
atgcataaagtaggaaaattcttagcaagaattcttgtataagcattcatagcagctttagacaagacataagcaccaccagttttaggccatcctttgc |
11982833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 11977640 - 11977797
Alignment:
| Q |
18 |
caaagtacttcaatagtaattataagtagtagtcttctttcaaataatctctcatgtccttcctcccaaaagcttcataaagtattttctttttacaaca |
117 |
Q |
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| T |
11977640 |
caaagtacttcaataataattataagtagtagtcttctttcaaataatctctcatgtccttcctcccaaaagcttcttaaagtattttccttttccaaca |
11977739 |
T |
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| Q |
118 |
atctattagttttgcatataaatactttccttaatatagaaaacttgatgtagcaact |
175 |
Q |
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| T |
11977740 |
atcaattagttttgcatataaatactttccttaatctagaaaacttgatgtagcaact |
11977797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 381 - 538
Target Start/End: Original strand, 11972194 - 11972352
Alignment:
| Q |
381 |
tgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattgatg |
480 |
Q |
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| T |
11972194 |
tgctagcttcacaacactaacagcaccttcttcaaccgttaacaaaccgttattggcagttatatctgttatggtataaccagggcaaacactattgatg |
11972293 |
T |
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| Q |
481 |
cataaagtaggaaaattcttagcaagaattcttgtata-gcattcatagcagctttaga |
538 |
Q |
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| T |
11972294 |
catatagtaggaaattttttagcaagaattcttgtatatgcattcatagcagctttaga |
11972352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 11982343 - 11982419
Alignment:
| Q |
90 |
cttcataaagtattttctttttacaacaatctattagttttgcatataaatactttccttaatatagaaaacttgat |
166 |
Q |
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| T |
11982343 |
cttcctaaactattttcttcttccaacaatctattagttttgcagataaaccctttccttaatctagaaaacttgat |
11982419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 537
Target Start/End: Original strand, 12002655 - 12002835
Alignment:
| Q |
358 |
gatggacttccattgggaagcaatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttatatctgtgatgacat |
457 |
Q |
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|||||||| ||||||||||||| ||||| | | ||| | ||| ||||||||||| | || |||| ||| |||||| |||||||||| || |||||| |
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| T |
12002655 |
gatggactaccattgggaagcagtgctaacctaacaggatgagcagcaccttcttccactgtgaagaaaccggtattagcagttatatcggttttgacat |
12002754 |
T |
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| Q |
458 |
aaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtat-agcattcatagcagctttag |
537 |
Q |
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| T |
12002755 |
aaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgtgtaagcattcatagaagctttag |
12002835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 537
Target Start/End: Original strand, 11986582 - 11986775
Alignment:
| Q |
345 |
atagaattggccagatggacttccattgggaagcaatgctagcttcacaacactagccgcaccttcttcagcagttaagagaccagtattaccagttata |
444 |
Q |
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|||||| |||||||||||||| || ||||||| ||||||| | | || | ||| ||||||||||| | || |||| ||| |||||| |||||||| |
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| T |
11986582 |
atagaagtggccagatggactaccgctgggaagtaatgctaacctaaccggatgagcagcaccttcttctaccgtgaagaaaccggtattagcagttata |
11986681 |
T |
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| Q |
445 |
tctgtgatgacataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtata-gcattcatagcagctttag |
537 |
Q |
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| T |
11986682 |
tcggttttgacataaccagggcaaacacaattgatgcagaagttaggatacttctttgcagtaattcttgtgtaggcattcatagaagctttag |
11986775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 421 - 536
Target Start/End: Original strand, 12007944 - 12008060
Alignment:
| Q |
421 |
aagagaccagtattaccagttatatctgtgatgacataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtata-g |
519 |
Q |
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|||||||| |||||| |||||||||| || |||||||||||||||||| || ||||||||| ||| ||| | || || |||| |||||||||||| | |
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| T |
12007944 |
aagagaccggtattagcagttatatcggttttgacataaccagggcaaacacaattgatgcagaaaccagggtacttttttgcaataattcttgtatagg |
12008043 |
T |
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| Q |
520 |
cattcatagcagcttta |
536 |
Q |
| |
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||||||||| ||||||| |
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| T |
12008044 |
cattcatagaagcttta |
12008060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 537
Target Start/End: Original strand, 11996240 - 11996324
Alignment:
| Q |
454 |
acataaccagggcaaatactattgatgcataaagtaggaaaattcttagcaagaattcttgtata-gcattcatagcagctttag |
537 |
Q |
| |
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|||||||||||||||| || ||||||||| ||| | ||| | ||||| ||||||||| ||||||| |||||||||| |||||||| |
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| T |
11996240 |
acataaccagggcaaacacaattgatgcagaaattcggatatttctttgcaagaattattgtataggcattcatagaagctttag |
11996324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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