View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_8 (Length: 428)
Name: NF15378_low_8
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 8778932 - 8778537
Alignment:
| Q |
20 |
tctcatttctcatactgacttgatcgtcagagcgctaacatacttgcaaatacctttcatcccactatgaaattgctttgccatggtaccgaagcaccgt |
119 |
Q |
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| T |
8778932 |
tctcatttctcatactgatttgatcgtcagagcgctaacgtacttgcaaatacctttcgtcccactatgaaattgctttgccacggtaccgaagcaccgt |
8778833 |
T |
|
| Q |
120 |
gccgtttccgtcaccaccatccatccttatcggacagatcagacctcggtttacaagtgcattgtaaaaatttccaatattttttcattaaaatgtaaca |
219 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8778832 |
gccgtttccgtcaccaccatccatccttatcagacagatcagacctcggtttacaagtgcattctaaaaatttccaatattttttcattaaaatgtaaca |
8778733 |
T |
|
| Q |
220 |
atgtaccatagttgtaaaatattacctccacgaatctaaaatttctgatccgtccccgaggcaagttgaagttttgaacctgccatcactaactagaaat |
319 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8778732 |
atgtaccatagttgtaaaatattacctccacg-atctaaaatttctgatccgtccccgaggcaagttgaagttttgaacctgccatcactaactagaaat |
8778634 |
T |
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| Q |
320 |
atgatcacagatacaaatctaacatattatttctatttctacnnnnnnnnccttcattggtgaatgtgcataaaccatttaaacttgttaatgtgat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8778633 |
atgatcacagatacaaatctaacatattatttctatttctacttttttttccttcattggtgaatgtgcataaaccatttaaacttgttgatgtgat |
8778537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 50151938 - 50151986
Alignment:
| Q |
112 |
agcaccgtgccgtttccgtcaccaccatccatccttatcggacagatca |
160 |
Q |
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| T |
50151938 |
agcaccgtgccgttaccgttgccaccatccatccttaccggacaaatca |
50151986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 46016167 - 46016123
Alignment:
| Q |
14 |
cactcatctcatttctcatactgacttgatcgtcagagcgctaac |
58 |
Q |
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||||| |||||||||||||||||| ||||||||| ||| |||||| |
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| T |
46016167 |
cactcctctcatttctcatactgatttgatcgtcggagtgctaac |
46016123 |
T |
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