View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15378_low_9 (Length: 422)
Name: NF15378_low_9
Description: NF15378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15378_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 1538005 - 1538346
Alignment:
| Q |
1 |
ataatcatctttgaaataatgaacaaagactatagaaatgtaaaagttgatgcccaatagaacaaggcattcaatcagagaaccattcctaggtctctga |
100 |
Q |
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| T |
1538005 |
ataatcatctttgaaataatgaacaaagactatagaaatgtaaaagttgatgcccaatagaacaaggcattcaatcagagaaccattcctaggtctctga |
1538104 |
T |
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| Q |
101 |
acaatggttgaaaacagagagaaaacaaagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgat |
200 |
Q |
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| T |
1538105 |
acaatggttgaaaacagagagaaaacaaagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgat |
1538204 |
T |
|
| Q |
201 |
ggattggtccttcaacatttgtgaaaagaaaactagaaatgagaagaagtagttggattgaataaccaaccactgttgcaagcctctgtctatcattgac |
300 |
Q |
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| T |
1538205 |
ggattggtccttcaacatttgtgaaaagaaaactagaaatgagaagaagtagttggattgaataactaaccactgttgcaagcctctgtctatcattgac |
1538304 |
T |
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| Q |
301 |
agagggatgctcaggttgtgttggtggtgcttcttcatcagc |
342 |
Q |
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| T |
1538305 |
agagggatgctcaggttgtgttggtggtgcttcttcatcagc |
1538346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 380
Target Start/End: Original strand, 1538282 - 1538321
Alignment:
| Q |
341 |
gcaagcctctgtctatcattggcagagggatgctcaggtt |
380 |
Q |
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| T |
1538282 |
gcaagcctctgtctatcattgacagagggatgctcaggtt |
1538321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 43 - 340
Target Start/End: Complemental strand, 10164561 - 10164263
Alignment:
| Q |
43 |
aaagttgatgcccaat-agaacaaggcattcaatcagagaaccattcctaggtctctgaacaatggttgaaaacagagagaaaacaaagaggagatgaaa |
141 |
Q |
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||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10164561 |
aaagttgatgcccaaacagaacaagacattcaaacagggaaccattcctaggtctctgaacaatggttgcaaacagagagaaaacaaagaggagatgaaa |
10164462 |
T |
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| Q |
142 |
agcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtccttcaacatttgtgaaaagaaaactagaaatg |
241 |
Q |
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|||||| | ||||||| ||||| | ||| ||||||||| ||||||||||| |||||||||||| |||||||||| ||| ||||||||||| |||||||| |
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| T |
10164461 |
agcagttacaaaggaaaaaaacgaatttttgacatctttatggttaatgagatagtgatggatcggtccttcaaggtttttgaaaagaaaagtagaaatg |
10164362 |
T |
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| Q |
242 |
agaagaagtagttggattgaataaccaaccactgttgcaagcctctgtctatcattgacagagggatgctcaggttgtgttggtggtgcttcttcatca |
340 |
Q |
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||||||| ||||| |||||| |||| ||||||||||||||||||| || |||||||||||||| ||||||| ||||||| ||||||||||||||||||| |
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| T |
10164361 |
agaagaaatagtttgattgagtaactaaccactgttgcaagcctccgtgtatcattgacagagtgatgctcgggttgtggtggtggtgcttcttcatca |
10164263 |
T |
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