View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15379_high_2 (Length: 416)
Name: NF15379_high_2
Description: NF15379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15379_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 2 - 398
Target Start/End: Complemental strand, 23976017 - 23975621
Alignment:
| Q |
2 |
gtgggactggaacccaatgtggtgccctcaccgagccggttatgttgctaaagaatctatgagccgttggtgtgtcgttgaaaggtggtagggaaggcat |
101 |
Q |
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| T |
23976017 |
gtgggactggaacccaatgcggtgccctcaccgagccggttatgttgctaaagaatctatgagccgttggtgtgtcgttgaaaggtggtagggaaggcat |
23975918 |
T |
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| Q |
102 |
gataggtagttgtggtgataataaggcatcataaacgacaatgccacgagttgtgatgttggcgaagtcgcggacaccaacttcgtaaggagaggcagcc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23975917 |
gataggtagttgtggtgataataaggcatcataaacgacaatgccacgagttgtgatgttggcaaagtcgcggacaccaacttcgtaaggagaggcagcc |
23975818 |
T |
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| Q |
202 |
atgtagtatgagcctataggttggtttgctgtgaacaaagcatcaaccgtttggccaggggcgataacgatgacgtcggtcttgaatggatcggtgtagt |
301 |
Q |
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|||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||||| ||||||| |
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| T |
23975817 |
atgtagtaagatcctataggttgatttgctgtgaacaaagcatcaactgtttggccaggggcgataacgatgatgtcagtctcgaatggattcgtgtagt |
23975718 |
T |
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| Q |
302 |
cagcatctagtgcaacaactgtgaaattgtgatttgctattttgaagaaaagatgattattgagtgcaacattgattattcgtagtaagtatgtcat |
398 |
Q |
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| T |
23975717 |
cagcatccagtgcaacaactgtgaaactgtgatttgctattttgaagaaaagattgttattgagtgcaacattgattatccgtagcaagtatgtcat |
23975621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 6026172 - 6026096
Alignment:
| Q |
316 |
acaactgtgaaattgtgatttgctattttgaagaaaagatgattattgagtgcaacattgattattcgtagtaagta |
392 |
Q |
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|||||||||||| | || |||||||| ||||||||| | || | |||||||||| ||||||| || ||||||||||| |
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| T |
6026172 |
acaactgtgaaactatggtttgctatcttgaagaaatgttgttcattgagtgcagcattgataatgcgtagtaagta |
6026096 |
T |
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