View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15379_low_1 (Length: 525)
Name: NF15379_low_1
Description: NF15379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15379_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 9e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 316 - 508
Target Start/End: Complemental strand, 29477232 - 29477040
Alignment:
| Q |
316 |
tacagttactttaacttagacactgaccgtaatatcaaacatgcacatcgtctctttcctgttaattgctttcatttgttcatccatggaggagaaaaca |
415 |
Q |
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| T |
29477232 |
tacagttatcttaatttagacactgaccgtaatatcaaacatgcacatcgtctctttcctgttaattgctttcatttgttcatccatggaggaaaaaaca |
29477133 |
T |
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| Q |
416 |
aatacattttctctaatcaatttctttgtatatattcttttttcttcagtaatcacgtttacttaggccttccttcagttatagggtgatttg |
508 |
Q |
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| T |
29477132 |
gatacattttctctaatcaatttctttgtatatattcttttttcttcagtaatcacgtttacttaggccttccttcagttatagggtgatttg |
29477040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 212 - 276
Target Start/End: Complemental strand, 29477336 - 29477272
Alignment:
| Q |
212 |
ttagtgaatttgttaaaattttgatgagatattgtaattttgccaaatctatgttttggaggttc |
276 |
Q |
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| T |
29477336 |
ttagtgaatttgttaaaattttgatgagatattgtaattttgccaaatctatgttttggaggttc |
29477272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 45084394 - 45084297
Alignment:
| Q |
113 |
cttcccaagatatttctaacgtaaaagccacaagcttcaatttatagagttcggatttcgcacgtttgagagagtttgaacgcaaatccaaacgagca |
210 |
Q |
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| T |
45084394 |
cttctcaagatatttccaacgtaaaagccacaagctcaaatttgtatagtttggatttcgcacgtttgagagagttggaacacaaatccaaacaagca |
45084297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 45084442 - 45084385
Alignment:
| Q |
37 |
tatgtgtttggtttcacatctgcgccaatagactcatgtttgcacccacttcccaaga |
94 |
Q |
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| T |
45084442 |
tatgtgtttggtttcacatctgcaccaataggctcacgtttgcatacacttctcaaga |
45084385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 39753528 - 39753608
Alignment:
| Q |
133 |
gtaaaagccacaagcttcaatttatagagttcggatttcgcacgtttgagagagtttgaacgcaaatccaaacgagcactta |
214 |
Q |
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| T |
39753528 |
gtaaaagccacaagctccaatctgtagaatctggatttcgcacgtttgagagagtttg-acgcaaatccaaacaagcactta |
39753608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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