View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15379_low_10 (Length: 222)
Name: NF15379_low_10
Description: NF15379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15379_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 3679385 - 3679176
Alignment:
| Q |
1 |
agtactgctatttatcaagaacatgcctcatcacgatcttccctaatcgatacaccgtacacgttgtaattattaagaagaagtagtgtatagttcagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3679385 |
agtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaagaagaagtagtgtatagttcagga |
3679286 |
T |
|
| Q |
101 |
aggagcggagatcacagcgtatatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttttgatgaatactcttcgtacaaatat |
200 |
Q |
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| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3679285 |
atgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgttttttatgaatactcttcgtacaaatat |
3679186 |
T |
|
| Q |
201 |
cattatcctt |
210 |
Q |
| |
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|||||||||| |
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| T |
3679185 |
cattatcctt |
3679176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 3693909 - 3693706
Alignment:
| Q |
1 |
agtactgctatttatcaagaacatgcctcatcacgatcttccctaatcgatacaccgtacacgttgtaattattaag-aagaagtagtgtatagttcagg |
99 |
Q |
| |
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||||||| | |||||||| |||| |||||||| ||||||||| ||||||||| || ||||||||||| ||| |||||| ||||||| ||||||| |
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| T |
3693909 |
agtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatac---gt----gttgtaattataaaggaagaagcagtgtatggttcagg |
3693817 |
T |
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| Q |
100 |
aaggagcggagatcacagcgtatatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttttgatgaatactcttcgtacaaata |
199 |
Q |
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|| ||||||| ||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |||| |||||||| ||||| |
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| T |
3693816 |
aatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaatattcttcgtagaaata |
3693717 |
T |
|
| Q |
200 |
tcattatcctt |
210 |
Q |
| |
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||||||||||| |
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| T |
3693716 |
tcattatcctt |
3693706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 3686142 - 3685939
Alignment:
| Q |
1 |
agtactgctatttatcaagaacatgcctcatcacgatcttccctaatcgatacaccgtacacgttgtaattattaag-aagaagtagtgtatagttcagg |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||| ||||||||| || || |||||||| ||| ||||||| |||||||||||| | |
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| T |
3686142 |
agtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaaggaagaagttgtgtatagttcatg |
3686050 |
T |
|
| Q |
100 |
aaggagcggagatcacagcgtatatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttttgatgaatactcttcg-tacaaat |
198 |
Q |
| |
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|| ||||||| ||||||| || ||||||||| ||| |||||||||||| |||||| |||| |||| |||||||| |||| ||| |||||| | ||||| |
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| T |
3686049 |
aatgagcggaaatcacagtgtgtatgtgttaaaag-aaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttcgatgcaaat |
3685951 |
T |
|
| Q |
199 |
atcattatcctt |
210 |
Q |
| |
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|||||||||||| |
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|
| T |
3685950 |
atcattatcctt |
3685939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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